RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CBX6O95503 412 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 PROCP04070 461 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 GSTA1P08263 222 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 RPS17P08708 135 aaKnown RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 ATP5F1P24539 256 aaPredicted RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 TNFRSF8P28908 595 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 TPP2P29144 1249 aaPredicted RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 CYB561P49447 251 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 HNRNPFP52597 415 aaKnown RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 PLIN5Q00G26 463 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 TNFRSF17Q02223 184 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 EIF2S3LQ2VIR3 472 aaKnown RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 GGTA1PQ4G0N0 100 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 FRG2Q64ET8 278 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ZNF793Q6ZN11 406 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 PAGE2Q7Z2X7 111 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 UBE3DQ7Z6J8 389 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 GPR180Q86V85 440 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 RNF175Q8N4F7 328 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 KIF2BQ8N4N8 673 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 TMEM156Q8N614 296 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 TMEM52Q8NDY8 209 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 OR52B6Q8NGF0 335 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 OR5L2Q8NGL0 311 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 DNAJB8Q8NHS0 232 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 WDR20Q8TBZ3 569 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ZNF483Q8TF39 744 aaPredicted RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 TANKQ92844 425 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 NCLNQ969V3 563 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ART5Q96L15 291 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 DGAT2Q96PD7 388 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 FRG2BQ96QU4 278 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 MAPKAP1Q9BPZ7 522 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 PELOQ9BRX2 385 aaKnown RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 NTMT1Q9BV86 223 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ALOXE3Q9BYJ1 711 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 TXLNGYQ9BZA5 131 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 RPF2Q9H7B2 306 aaKnown RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 KLHL1Q9NR64 748 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 LRFN1Q9P244 771 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 DCDC2Q9UHG0 476 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 SNX6Q9UNH7 406 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 NTNG1Q9Y2I2 539 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ESPL1Q14674 2120 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PRRC2CQ9Y520 2896 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 ANKRD12Q6UB98 2062 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SMIM23A6NLE4 172 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 C17orf105B2RV13 164 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 OR10H2O60403 315 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 LDB3O75112 727 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 GUCY1B2O75343 617 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 KRT6AP02538 564 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 KRT6BP04259 564 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 FAM58BPP0C7Q3 252 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 NR2F6P10588 404 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 GCAP28676 217 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 HMOX2P30519 316 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 CD96P40200 585 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 STT3AP46977 705 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 CCT5P48643 541 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 KRT6CP48668 564 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SSR4P51571 173 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 NEK2P51955 445 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PER3P56645 1201 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 MLF1P58340 268 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 HERVK_113P63132 956 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 CLCQ05315 142 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 RBPJQ06330 500 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 IFFO1Q0D2I5 559 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 TRAF3Q13114 568 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 RASA2Q15283 850 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SGO1Q5FBB7 561 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 C6orf163Q5TEZ5 329 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SPINK14Q6IE38 97 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SLC25A25Q6KCM7 469 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 GFRALQ6UXV0 394 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 HSDL2Q6YN16 418 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 GPALPP1Q8IXQ4 340 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 AMER2Q8N7J2 671 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 CCDC63Q8NA47 563 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 LRRN4CLQ8ND94 238 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 MORN4Q8NDC4 146 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 NFAM1Q8NET5 270 aaPredicted RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 MYRIPQ8NFW9 859 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 OR4F6Q8NGB9 312 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 TRPC4APQ8TEL6 797 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SSC4DQ8WTU2 575 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 SELENOMQ8WWX9 145 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 NR4A3Q92570 626 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 MTFMTQ96DP5 389 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 CCDC126Q96EE4 140 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 RBM18Q96H35 190 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 NSUN5Q96P11 429 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 BARD1Q99728 777 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 SORBS1Q9BX66 1292 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 C1QTNF3Q9BXJ4 246 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 ERVK-6Q9BXR3 956 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 OR8D2Q9GZM6 311 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 IQCGQ9H095 443 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms