RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 RNF212BA8MTL3 300 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ATP9AO75110 1047 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 GLCEO94923 617 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 SLU7O95391 586 aaKnown RBP2.7□□□□□ -1.98
VPS13C-207ENST00000558919 SLC16A8O95907 504 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 CALCAP01258 141 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 UMPSP11172 480 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ID1P41134 155 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 TRA2BP62995 288 aaKnown RBP2.7□□□□□ -1.98
VPS13C-207ENST00000558919 LTB4RQ15722 352 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 NHSL2Q5HYW2 709 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 MARC1Q5VT66 337 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 C1orf189Q5VU69 101 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 PAMR1Q6UXH9 720 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 FAM47EQ6ZV65 393 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 C11orf42Q8N5U0 333 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 CCDC197Q8NCU1 140 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 OR7G3Q8NG95 312 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 GOLGA5Q8TBA6 731 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 SPATA18Q8TC71 538 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 CDKN2AIPNLQ96HQ2 116 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ZNF559Q9BR84 538 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ZDHHC6Q9H6R6 413 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 TMEM206Q9H813 350 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ARMCX1Q9P291 453 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 LEF1Q9UJU2 399 aaPredicted RBP2.7□□□□□ -1.98
VPS13C-207ENST00000558919 ERVK-19Q9WJR5 959 aa2.7□□□□□ -1.98
VPS13C-207ENST00000558919 PRRC2AP48634 2157 aaKnown RBP2.7□□□□□ -1.98
VPS13C-207ENST00000558919 HAT1O14929 419 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 MCF2LO15068 1137 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 CSO75390 466 aaKnown RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 LY6G6DO95868 133 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 CCDC159P0C7I6 412 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 MAGEB1P43366 347 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 HMGCS2P54868 508 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 RPL27P61353 136 aaKnown RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 GSTO1P78417 241 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 CRMP1Q14194 572 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 NFE2L1Q14494 772 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ABRAXAS2Q15018 415 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 MEP1BQ16820 701 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 SLC22A6Q4U2R8 563 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD20A4Q4UJ75 823 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD20A8PQ5CZ79 823 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ZNF789Q5FWF6 425 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD20A2Q5SQ80 823 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD20A1Q5TYW2 823 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD20A3Q5VUR7 823 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 TUSC5Q8IXB3 177 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 Q8N7P7 452 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 OR1K1Q8NGR3 316 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 PRCCQ92733 491 aaPredicted RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ESAMQ96AP7 390 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ULK4Q96C45 1275 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ZBED6CLQ96FA7 236 aaPredicted RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 C16orf58Q96GQ5 468 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 PCED1BQ96HM7 432 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 MCCC1Q96RQ3 725 aaPredicted RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 RANBP9Q96S59 729 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 NUSAP1Q9BXS6 441 aaKnown RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 AMBNQ9NP70 447 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 SENP1Q9P0U3 644 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 SEPT10Q9P0V9 454 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 DNAJB9Q9UBS3 223 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ZNF256Q9Y2P7 627 aaPredicted RBP2.69□□□□□ -1.98
VPS13C-207ENST00000558919 OR1A2Q9Y585 309 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 FGD5Q6ZNL6 1462 aa2.69□□□□□ -1.98
VPS13C-207ENST00000558919 ZSCAN5CA6NGD5 496 aaPredicted RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 H0YIG0 161 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 CHUKO15111 745 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 LRRTM2O43300 516 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 STX6O43752 255 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 DUSP11O75319 330 aaKnown RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 FCGR3AP08637 254 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 GIG44P09565 113 aaPredicted RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 PPP2R1BP30154 601 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 ST8SIA6P61647 398 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 IGLV3-21P80748 117 aaPredicted RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 NDPQ00604 133 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 EMC2Q15006 297 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 OR1C1Q15619 314 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 ANKRD55Q3KP44 614 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 TTC31Q49AM3 519 aaPredicted RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 FAM133BQ5BKY9 247 aaKnown RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 WDR25Q64LD2 544 aaPredicted RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 ABRAXAS1Q6UWZ7 409 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 GALNTL5Q7Z4T8 443 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 HOOK3Q86VS8 718 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 THEM5Q8N1Q8 247 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 ZNF491Q8N8L2 437 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 ICA1LQ8NDH6 482 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 GGHQ92820 318 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 TEKT1Q969V4 418 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 MRPL24Q96A35 216 aaKnown RBP2.68□□□□□ -1.98
VPS13C-207ENST00000558919 PPP1R16AQ96I34 528 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 B3GALT6Q96L58 329 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 GUCD1Q96NT3 240 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 S1PR3Q99500 378 aa2.68□□□□□ -1.98
VPS13C-207ENST00000558919 YTHDF1Q9BYJ9 559 aaKnown RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms