RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 OR4C11Q6IEV9 310 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PRSS41Q7RTY9 318 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 TDRPQ86YL5 185 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 GPALPP1Q8IXQ4 340 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 ZCCHC7Q8N3Z6 543 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 RBMXL3Q8N7X1 1067 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 ACOT4Q8N9L9 421 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 L3MBTL4Q8NA19 623 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 OR5T3Q8NGG3 340 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 OR5L2Q8NGL0 311 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 DNAJB8Q8NHS0 232 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 HUS1BQ8NHY5 278 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 TANKQ92844 425 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 ESAMQ96AP7 390 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PHF21BQ96EK2 531 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 VMP1Q96GC9 406 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 RBM18Q96H35 190 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 IMMP1LQ96LU5 166 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 FRG2BQ96QU4 278 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 RBCK1Q9BYM8 510 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 SHCBP1LQ9BZQ2 653 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 NOL11Q9H8H0 719 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 DMRT3Q9NQL9 472 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 LANCL2Q9NS86 450 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 GALNT8Q9NY28 637 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 NDUFA13Q9P0J0 144 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 STOML1Q9UBI4 398 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 ADAM29Q9UKF5 820 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PSME2Q9UL46 239 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 PAIP2BQ9ULR5 123 aaKnown RBP8.13□□□□□ -1.11
USP3-208ENST00000558285 ARL2BPQ9Y2Y0 163 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 HEATR5BQ9P2D3 2071 aa8.13□□□□□ -1.11
USP3-208ENST00000558285 TCRBV16S1A1N1A0A5B0 115 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 E2F3O00716 465 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 COPEO14579 308 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ATP6V1G1O75348 118 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SUPT7LO94864 414 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 UBOX5O94941 541 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SCELO95171 688 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 TGFB1P01137 390 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ENO1P06733 434 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 MTHFD2P13995 350 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 DDX5P17844 614 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 ATP5A1P25705 553 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 HMOX2P30519 316 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 RASSF2P50749 326 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 CASP6P55212 293 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 LIM2P55344 173 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 PKNOX1P55347 436 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SLC26A5P58743 744 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 MAGOHP61326 146 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 SRSF11Q05519 484 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 TBL3Q12788 808 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 KRT71Q3SY84 523 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 CCDC92Q53HC0 331 aaPredicted RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 ACER2Q5QJU3 275 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 FHL5Q5TD97 284 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ZNF787Q6DD87 383 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 GPR180Q86V85 440 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 RPS19BP1Q86WX3 136 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 SRRM1Q8IYB3 904 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 ALDH16A1Q8IZ83 802 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SAMD14Q8IZD0 417 aaPredicted RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 EID3Q8N140 333 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 DTWD1Q8N5C7 304 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SIRT6Q8N6T7 355 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 MORN4Q8NDC4 146 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 B3GNT7Q8NFL0 401 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 OR1N1Q8NGS0 311 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 MIB2Q96AX9 1013 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 GPR78Q96P69 363 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 F2RL3Q96RI0 385 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 FAIM2Q9BWQ8 316 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ROPN1BQ9BZX4 212 aaPredicted RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 SPNS1Q9H2V7 528 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 DCLRE1BQ9H816 532 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ROPN1Q9HAT0 212 aaPredicted RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 BRF2Q9HAW0 419 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 PFDN4Q9NQP4 134 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 TRPS1Q9UHF7 1281 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 DCTN4Q9UJW0 460 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ZNF490Q9ULM2 529 aaPredicted RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 PCDHGB6Q9Y5F9 930 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 TLN1Q9Y490 2541 aaKnown RBP8.12□□□□□ -1.11
USP3-208ENST00000558285 HMX2A2RU54 273 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 OR10H2O60403 315 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 PRAMEF2O60811 474 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 JRKO75564 520 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 ZFAND5O76080 213 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 RASAL1O95294 804 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 CHEK2O96017 543 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 PDGFAP04085 211 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 KRT16P08779 473 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 CERS1P27544 350 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 GSTM5P46439 218 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 CYB561P49447 251 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 MLLT10P55197 1068 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 KCNJ2P63252 427 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 HYAL2Q12891 473 aa8.12□□□□□ -1.11
USP3-208ENST00000558285 SLAMF1Q13291 335 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms