RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NPHS2Q9NP85 383 aa11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 NPDC1Q9NQX5 325 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 ENAMQ9NRM1 1142 aa11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 ADGRE2Q9UHX3 823 aa11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 ZNF490Q9ULM2 529 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 PLCL2Q9UPR0 1127 aa11.73□□□□□ -0.53
CLSTN3-208ENST00000538933 A0A0J9YVX5 310 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 A0A1W2PQ72 361 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 TMEM233B4DJY2 109 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 MANBAO00462 879 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 HDAC3O15379 428 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 PRAMEF2O60811 474 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 FGF4P08620 206 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 SERPINB1P30740 379 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 FOXA1P55317 472 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 TFF3Q07654 80 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 PCDH1Q08174 1060 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 C10orf62Q5T681 223 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 SCIMPQ6UWF3 145 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 PAQR7Q86WK9 346 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 PRIMA1Q86XR5 153 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 PLD3Q8IV08 490 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 SIRT6Q8N6T7 355 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 C8orf44Q96CB5 159 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 GPR137Q96N19 417 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 ZFYVE21Q9BQ24 234 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 SIKE1Q9BRV8 207 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 CENPKQ9BS16 269 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 NUF2Q9BZD4 464 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 RABEP2Q9H5N1 569 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 NT5DC2Q9H857 520 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 CCM2LQ9NUG4 571 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 RIC8BQ9NVN3 520 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 HAO1Q9UJM8 370 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 NXT1Q9UKK6 140 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 MRPS2Q9Y399 296 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 USH1CQ9Y6N9 552 aa11.72□□□□□ -0.53
CLSTN3-208ENST00000538933 IGKV1-8A0A0C4DH67 115 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 A0A0G2JND7 137 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 OR2A25A4D2G3 310 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 H0YIV9 168 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SLC28A1O00337 649 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 DSCR3O14972 297 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 RGS14O43566 566 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 PRAMEF4O60810 478 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 BMP10O95393 424 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 TGDSO95455 350 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 PDYNP01213 254 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 EIF2S1P05198 315 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SERPINA7P05543 415 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 CELA2AP08217 269 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SLC35G6P0C7Q6 338 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 PIM1P11309 404 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 COX6A1P12074 109 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ACPPP15309 386 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 CD22P20273 847 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 GSTM2P28161 218 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ARSFP54793 590 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 CBX1P83916 185 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 KLC1Q07866 573 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 RGS1Q08116 209 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SF3A3Q12874 501 aaKnown RBP eCLIP11.71□□□□□ -0.536e-9■■■■■ 32.1
CLSTN3-208ENST00000538933 KRTCAP3Q53RY4 240 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 TCHHL1Q5QJ38 904 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 PRAMEF9Q5VWM5 478 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 NXNQ6DKJ4 435 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ZNF425Q6IV72 752 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ACAD11Q709F0 780 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 DOLPP1Q86YN1 238 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 DTWD1Q8N5C7 304 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 MFSD9Q8NBP5 474 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 TRPV3Q8NET8 790 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 OR7G3Q8NG95 312 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 OR4K1Q8NGD4 311 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 HUS1BQ8NHY5 278 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 THAP11Q96EK4 314 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 VPS50Q96JG6 964 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ZNF317Q96PQ6 595 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 MTERF1Q99551 399 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 CCT7Q99832 543 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 SPNS1Q9H2V7 528 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 TNFRSF12AQ9NP84 129 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 NMRK1Q9NWW6 199 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ZFP69BQ9UJL9 534 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 DCTN4Q9UJW0 460 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 ZNF225Q9UK10 706 aa11.71□□□□□ -0.53
CLSTN3-208ENST00000538933 TLN2Q9Y4G6 2542 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 KCNE1BA0A087WTH5 132 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 KIAA1324LA8MWY0 1029 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 E9PLN8 166 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 PIP5K1BO14986 540 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 NDUFS4O43181 175 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNHIT1O43257 154 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SHOX2O60902 331 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 LINC00032P0C843 101 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 HSD3B1P14060 373 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 HSD3B2P26439 372 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 AHRP35869 848 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms