RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GTPBP2Q9BX10 602 aaKnown RBP6.3□□□□□ -1.4
USP28-202ENST00000535607 BBS2Q9BXC9 721 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 DPY30Q9C005 99 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 MEGF9Q9H1U4 602 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 FAM83DQ9H4H8 585 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 ZBTB20Q9HC78 741 aaPredicted RBP6.3□□□□□ -1.4
USP28-202ENST00000535607 ZFP14Q9HCL3 533 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 ASAH2Q9NR71 780 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 RBM22Q9NW64 420 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP28-202ENST00000535607 C1orf109Q9NX04 203 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 DDIT4Q9NX09 232 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 IMPAD1Q9NX62 359 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 NUDT4Q9NZJ9 180 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 SPASTQ9UBP0 616 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 PSORS1C1Q9UIG5 152 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 IKZF3Q9UKT9 509 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 CORO2BQ9UQ03 480 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 GINS2Q9Y248 185 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 MKI67P46013 3256 aaKnown RBP6.3□□□□□ -1.4
USP28-202ENST00000535607 MIA3Q5JRA6 1907 aa6.3□□□□□ -1.4
USP28-202ENST00000535607 TRIP12Q14669 1992 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 ANKRD36A6QL64 1941 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 A0A096LPI6 279 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ASPDHA6ND91 283 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OR5K3A6NET4 321 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OR6C70A6NIJ9 312 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 C12orf71A8MTZ7 269 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 A8MVJ9 347 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 TFECO14948 347 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 ANKRD28O15084 1053 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 RGS5O15539 181 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ORC5O43913 435 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 KLK8O60259 260 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 HCN1O60741 890 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ZNF780AO75290 641 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 RPP40O75818 363 aaKnown RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 OR2B3O76000 313 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OR7A10O76100 309 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 WISP3O95389 354 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 SERPINA1P01009 418 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 POMCP01189 267 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 C9P02748 559 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 CXCL10P02778 98 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 CD1AP06126 327 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 CNPP09543 421 aaKnown RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 ANXA8P13928 327 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 SPNP16150 400 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ZNF37AP17032 561 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 TSPAN8P19075 237 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 HLA-DPA1P20036 260 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 MALP21145 153 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 CD9P21926 228 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 PPIBP23284 216 aaKnown RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 GADD45AP24522 165 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 HLA-FP30511 346 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 HOXA11P31270 313 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 CA5AP35218 305 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 GGT5P36269 586 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 MAGEA2P43356 314 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 PIK3CGP48736 1102 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 RGS6P49758 472 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 MAPK12P53778 367 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 MTPNP58546 118 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 DSC2Q02487 901 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 TLE1Q04724 770 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 NPRL3Q12980 569 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OLIG2Q13516 323 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 C1DQ13901 141 aaKnown RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 SIM2Q14190 667 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 FGL2Q14314 439 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 PON2Q15165 354 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 LRRC26Q2I0M4 334 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 FAM214AQ32MH5 1076 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 TTLL9Q3SXZ7 439 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 PARP15Q460N3 678 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 BCL7AQ4VC05 210 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 RUNDC3AQ59EK9 446 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 LCN1P1Q5VSP4 162 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 C9orf57Q5W0N0 161 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 PM20D1Q6GTS8 502 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 LAIR2Q6ISS4 152 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ZNF529Q6P280 563 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 ENPP6Q6UWR7 440 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 HSDL2Q6YN16 418 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 CYHR1Q6ZMK1 362 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 DPY19L3Q6ZPD9 716 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 DET1Q7L5Y6 550 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 LUZP2Q86TE4 346 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 GPSM1Q86YR5 675 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 SLC44A2Q8IWA5 706 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 LILRA3Q8N6C8 439 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 B3GALNT2Q8NCR0 500 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 C19orf18Q8NEA5 215 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 FAM83FQ8NEG4 500 aaPredicted RBP6.29□□□□□ -1.4
USP28-202ENST00000535607 LPCAT1Q8NF37 534 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OR5H6Q8NGV6 325 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 OR10A6Q8NH74 314 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 IFI44Q8TCB0 444 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 METTL6Q8TCB7 284 aa6.29□□□□□ -1.4
USP28-202ENST00000535607 DEDD2Q8WXF8 326 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms