RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	C7orf57	Q8NEG2	295 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR14A16	Q8NHC5	309 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	NEIL3	Q8TAT5	605 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	NTNG2	Q96CW9	530 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	FAR2	Q96K12	515 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZIM3	Q96PE6	472 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	AIF1L	Q9BQI0	150 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	BDH2	Q9BUT1	245 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	CNPPD1	Q9BV87	410 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	PELI2	Q9HAT8	420 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	TUBA8	Q9NY65	449 aa	Predicted RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	CLDN16	Q9Y5I7	305 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	MAD1L1	Q9Y6D9	718 aa		11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079	FN1	P02751	2386 aa	Known RBP	11.47	□□□□□ -0.57
CAPN1-223	ENST00000533079		H3BQF6	201 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	HRG	P04196	525 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	ENO2	P09104	434 aa	Predicted RBP	11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	CCL3	P10147	92 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	PCSK6	P29122	969 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	BMPR2	Q13873	1038 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRIP13	Q15645	432 aa	Predicted RBP	11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	MPEG1	Q2M385	716 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF750	Q32MQ0	723 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	CASC4	Q6P4E1	433 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	POMZP3	Q6PJE2	187 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	C16orf47	Q6ZP98	133 aa	Predicted RBP	11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	LIX1	Q8N485	282 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	NAT8L	Q8N9F0	302 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	TTL	Q8NG68	377 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	EEF1AKMT1	Q8WVE0	214 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	PIGT	Q969N2	578 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	NEIL2	Q969S2	332 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF669	Q96BR6	464 aa	Predicted RBP	11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	PYCR2	Q96C36	320 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	FBXL8	Q96CD0	374 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	DACH2	Q96NX9	599 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR4K3	Q96R72	315 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRIM54	Q9BYV2	358 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	EPB41L4B	Q9H329	900 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	ARL15	Q9NXU5	204 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	TAS2R13	Q9NYV9	303 aa		11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	FBN1	P35555	2871 aa	Known RBP	11.46	□□□□□ -0.57
CAPN1-223	ENST00000533079	C4orf51	C9J302	202 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	TGFBR3L	H3BV60	316 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	SMPD2	O60906	423 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	TTC4	O95801	387 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	IL18BP	O95998	194 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ABHD2	P08910	425 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	PPP2R1B	P30154	601 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	OPRM1	P35372	400 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	HNF4A	P41235	474 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF136	P52737	540 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	KCNJ2	P63252	427 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	RNF4	P78317	190 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.45	□□□□□ -0.58	4e-7	■■■■□ 24.6
CAPN1-223	ENST00000533079	TOR1AIP1	Q5JTV8	583 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	MCU	Q8NE86	351 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	TNIP2	Q8NFZ5	429 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC22A8	Q8TCC7	542 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	PAQR8	Q8TEZ7	354 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	UBLCP1	Q8WVY7	318 aa	Predicted RBP	11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ISL2	Q96A47	359 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	FAM167B	Q9BTA0	163 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	PRDM14	Q9GZV8	571 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	SPNS1	Q9H2V7	528 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	LIN28A	Q9H9Z2	209 aa	Known RBP	11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	SH2D2A	Q9NP31	389 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZFP64	Q9NPA5	681 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	JKAMP	Q9P055	326 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	COPS7A	Q9UBW8	275 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	VTI1B	Q9UEU0	232 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	DYRK1B	Q9Y463	629 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZNF407	Q9C0G0	2248 aa		11.45	□□□□□ -0.58
CAPN1-223	ENST00000533079	ZCWPW2	A0A1B0GU75	182 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	HMGB1P1	B2RPK0	211 aa	Predicted RBP	11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079		E7ESA3	106 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079		H7C1Q1	480 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	RIPK2	O43353	540 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	B3GALT2	O43825	422 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	IFNA16	P05015	189 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	MYZAP	P0CAP1	466 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	MLN	P12872	115 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	BMP7	P18075	431 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	BTN3A2	P78410	334 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	SERTAD2	Q14140	314 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	AGBL2	Q5U5Z8	902 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC22A10	Q63ZE4	541 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	NSUN5P2	Q63ZY6	315 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	TMPRSS11B	Q86T26	416 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC15A4	Q8N697	577 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	FAM47B	Q8NA70	645 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	GABPB2	Q8TAK5	448 aa	Predicted RBP	11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	NUBPL	Q8TB37	319 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	SLC2A12	Q8TD20	617 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	PTPMT1	Q8WUK0	201 aa	Predicted RBP	11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	LINGO1	Q96FE5	620 aa		11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	SECISBP2	Q96T21	854 aa	Known RBP	11.44	□□□□□ -0.58
CAPN1-223	ENST00000533079	KLHL31	Q9H511	634 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms