RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PRTFDC1Q9NRG1 225 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 HOMER3Q9NSC5 361 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 TMEM160Q9NX00 188 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 GALPQ9UBC7 116 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 LPAR3Q9UBY5 353 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 SLC6A5Q9Y345 797 aa7.5□□□□□ -1.21
CD44-232ENST00000531118 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.5□□□□□ -1.21
CD44-232ENST00000531118 A8MXE2 369 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 H3BMM5 538 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 PSMD3O43242 534 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 EIF4EBP3O60516 100 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 GAS8O95995 478 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 GYPCP04921 128 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 EPHA1P21709 976 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 FMO4P31512 558 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 RAB8AP61006 207 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 RPS4XP62701 263 aaKnown RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 CCZ1BP86790 482 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 CCZ1P86791 482 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 OCRLQ01968 901 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 TBL3Q12788 808 aaKnown RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 CUL1Q13616 776 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 BMPR2Q13873 1038 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 PHKG1Q16816 387 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ASTE1Q2TB18 679 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 ZNF791Q3KP31 576 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 BBS9Q3SYG4 887 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 NHSL2Q5HYW2 709 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 VASNQ6EMK4 673 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 SASS6Q6UVJ0 657 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 LCTLQ6UWM7 567 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 PPP1R21Q6ZMI0 780 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ZNF704Q6ZNC4 412 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 MBOAT1Q6ZNC8 495 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ZNF550Q7Z398 422 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 CLNKQ7Z7G1 428 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 RCOR2Q8IZ40 523 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 TMEM132CQ8N3T6 1108 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 FAM47BQ8NA70 645 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 OR14A16Q8NHC5 309 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ANKRD9Q96BM1 317 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 SPACA9Q96E40 222 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 DOHHQ9BU89 302 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 BEX2Q9BXY8 128 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ANGPTL4Q9BY76 406 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 OR8D2Q9GZM6 311 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 PCBD2Q9H0N5 130 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 SPNS1Q9H2V7 528 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 CNOT11Q9UKZ1 510 aaKnown RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 CAPN11Q9UMQ6 739 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 ZNF148Q9UQR1 794 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 CHCHD2Q9Y6H1 151 aaPredicted RBP7.49□□□□□ -1.21
CD44-232ENST00000531118 CMYA5Q8N3K9 4069 aa7.49□□□□□ -1.21
CD44-232ENST00000531118 A0A096LNT2 108 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.48□□□□□ -1.21
CD44-232ENST00000531118 TRBC2A0A5B9 178 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 CTAGE15A4D2H0 777 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 SYNDIG1LA6NDD5 238 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 E5RI56 91 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 FAM229AH3BQW9 127 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 HS3ST1O14792 307 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 OR1F1O43749 312 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 TNFSF13O75888 250 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 ESR1P03372 595 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 HPNP05981 417 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 MPC1LP0DKB6 136 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 CYP4B1P13584 511 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 ZNF16P17020 682 aaPredicted RBP7.48□□□□□ -1.21
CD44-232ENST00000531118 CFPP27918 469 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 PTPN7P35236 360 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 ACVR1BP36896 505 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 CD79BP40259 229 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 HNF4AP41235 474 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 GRIA1P42261 906 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 PCYT1AP49585 367 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 CDK9P50750 372 aaKnown RBP7.48□□□□□ -1.21
CD44-232ENST00000531118 HSD17B7P56937 341 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 RAB38P57729 211 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 FAM27E3Q08E93 113 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 ASPHQ12797 758 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 SLC13A2Q13183 592 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 TTLL9Q3SXZ7 439 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 UBAP2Q5T6F2 1119 aaKnown RBP7.48□□□□□ -1.21
CD44-232ENST00000531118 SLC22A10Q63ZE4 541 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 PLXDC2Q6UX71 529 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 DNM1P46Q6ZS02 220 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 STRA8Q7Z7C7 330 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 ADGRE4PQ86SQ3 457 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 CTAGE6Q86UF2 777 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 MEX3DQ86XN8 651 aaKnown RBP7.48□□□□□ -1.21
CD44-232ENST00000531118 ZNF611Q8N823 705 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 PRELID2Q8N945 189 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 FAM71DQ8N9W8 422 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 MORN4Q8NDC4 146 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 FAM13CQ8NE31 585 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 OR10G3Q8NGC4 313 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 OR5L2Q8NGL0 311 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 SLC22A8Q8TCC7 542 aa7.48□□□□□ -1.21
CD44-232ENST00000531118 SLC2A12Q8TD20 617 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms