RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DEFB126Q9BYW3 111 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 TSPAN10Q9H1Z9 355 aaPredicted RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 GSTO2Q9H4Y5 243 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 RPF2Q9H7B2 306 aaKnown RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 COPS7BQ9H9Q2 264 aaPredicted RBP9.9□□□□□ -0.82
CD44-227ENST00000528086 AGPAT4Q9NRZ5 378 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 LRFN1Q9P244 771 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 ADGRE2Q9UHX3 823 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 TEKT2Q9UIF3 430 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 CES1P1Q9UKY3 287 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 IKBKGQ9Y6K9 419 aa9.9□□□□□ -0.82
CD44-227ENST00000528086 CENPEQ02224 2701 aa9.9□□□□□ -0.83
CD44-227ENST00000528086 A0A088AWK7 358 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 C17orf105B2RV13 164 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 SLC25A12O75746 678 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 OR2J2O76002 312 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 OR6B1O95007 311 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 SEMA3DO95025 777 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 RASAL1O95294 804 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 PDYNP01213 254 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 PROCP04070 461 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 CT62P0C5K7 136 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 FAM58BPP0C7Q3 252 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 GP1BBP13224 206 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 ZNF10P21506 573 aaPredicted RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 COL8A1P27658 744 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 SLCO1A2P46721 670 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 STT3AP46977 705 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 CLCN2P51788 898 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 CCNG1P51959 295 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 PRKAA2P54646 552 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 FOXA1P55317 472 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 TAS2R50P59544 299 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 RAE1P78406 368 aaKnown RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 TGM3Q08188 693 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 PRSS53Q2L4Q9 553 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 SGO1Q5FBB7 561 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 TAOK1Q7L7X3 1001 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 MILR1Q7Z6M3 343 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 TDRPQ86YL5 185 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 C9orf40Q8IXQ3 194 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 METTL4Q8N3J2 472 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 CPSF7Q8N684 471 aaKnown RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 MORN4Q8NDC4 146 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 SIMC1Q8NDZ2 872 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 OR2W6PQ8NHA6 318 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 ACMSDQ8TDX5 336 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 TRIM44Q96DX7 344 aaPredicted RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 MTBPQ96DY7 904 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 C11orf24Q96F05 449 aaPredicted RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 SENP5Q96HI0 755 aaPredicted RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 RASL10BQ96S79 203 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 OR8D2Q9GZM6 311 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 ROGDIQ9GZN7 287 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 PSMC3IPQ9P2W1 217 aaPredicted RBP9.89□□□□□ -0.83
CD44-227ENST00000528086 MYOTQ9UBF9 498 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 TMCO1Q9UM00 188 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 HRH3Q9Y5N1 445 aa9.89□□□□□ -0.83
CD44-227ENST00000528086 A1L4Q6 167 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 WWP2O00308 870 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 MANBAO00462 879 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 LRRTM2O43300 516 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 SMIM24O75264 130 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 ZFAND5O76080 213 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 UNC5CO95185 931 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 GPR75O95800 540 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 IFNA16P05015 189 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 KLK1P06870 262 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 IMPDH1P20839 514 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 S1PR1P21453 382 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 HPDP32754 393 aaPredicted RBP9.88□□□□□ -0.83
CD44-227ENST00000528086 PTGER1P34995 402 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 RFC3P40938 356 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 SOX3P41225 446 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 CYB561P49447 251 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 RNF4P78317 190 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 HSF1Q00613 529 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 OC90Q02509 493 aaPredicted RBP9.88□□□□□ -0.83
CD44-227ENST00000528086 MGAT2Q10469 447 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 DUSP8Q13202 625 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 CDSNQ15517 529 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 C4orf17Q53FE4 359 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 C1QL3Q5VWW1 255 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 SULF2Q8IWU5 870 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 TMEM132CQ8N3T6 1108 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 CDYL2Q8N8U2 506 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 ARMC2Q8NEN0 867 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 MYRIPQ8NFW9 859 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 OR14A16Q8NHC5 309 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 DNAJB8Q8NHS0 232 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 RELTQ969Z4 430 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 TM4SF18Q96CE8 201 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 L3HYPDHQ96EM0 354 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 KCNA7Q96RP8 456 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 ZNF382Q96SR6 550 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 SERPINI1Q99574 410 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 PROK2Q9HC23 129 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 SH2D2AQ9NP31 389 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 PLEKHB1Q9UF11 243 aaPredicted RBP9.88□□□□□ -0.83
CD44-227ENST00000528086 SLC5A6Q9Y289 635 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms