RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 RPS6KA2Q15349 733 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 MAPRE2Q15555 327 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 NADK2Q4G0N4 442 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 RFTN2Q52LD8 501 aaPredicted RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 PDCD4Q53EL6 469 aaKnown RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 DEPDC1Q5TB30 811 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 AGAP7PQ5VUJ5 663 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ACSM2BQ68CK6 577 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 SLC6A19Q695T7 634 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ADNP2Q6IQ32 1131 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 IGFL2Q6UWQ7 119 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ZNF771Q7L3S4 317 aaPredicted RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 MIER2Q8N344 545 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 RNF175Q8N4F7 328 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 RBMXL3Q8N7X1 1067 aaKnown RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 AMER3Q8N944 861 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 CPT1CQ8TCG5 803 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 MARK4Q96L34 752 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 AGAP4Q96P64 663 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 SDR39U1Q9NRG7 319 aaPredicted RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 AHSPQ9NZD4 102 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ZIM2Q9NZV7 527 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ARMCX1Q9P291 453 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 VPS4AQ9UN37 437 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 GPR45Q9Y5Y3 372 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 SLC22A7Q9Y694 548 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 IDSB3KWA1 339 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 ATP5HO75947 161 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 TGFB1P01137 390 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 SLC35G6P0C7Q6 338 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 ICAM2P13598 275 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 PIK3R1P27986 724 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 TBL3Q12788 808 aaKnown RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 PWP1Q13610 501 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 HERC3Q15034 1050 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 IGFBP7Q16270 282 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 TMEM35AQ53FP2 167 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 IL23RQ5VWK5 629 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 KHDRBS2Q5VWX1 349 aaKnown RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 TMEM214Q6NUQ4 689 aaKnown RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 RIPOR1Q6ZS17 1223 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 NDUFAF7Q7L592 441 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 VN1R4Q7Z5H5 301 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 ASPGQ86U10 573 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 PLD3Q8IV08 490 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 METTL4Q8N3J2 472 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 METTL27Q8N6F8 245 aaPredicted RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 CREB3L4Q8TEY5 395 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 CHTF18Q8WVB6 975 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 CMTM5Q96DZ9 223 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 APIPQ96GX9 242 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 LMF1Q96S06 567 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 C1orf50Q9BV19 199 aa16.02■□□□□ 0.16
VIM-205ENST00000485947 CLK4Q9HAZ1 481 aaKnown RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 POLR3HQ9Y535 204 aaPredicted RBP16.02■□□□□ 0.16
VIM-205ENST00000485947 NBASA2RRP1 2371 aa16.02■□□□□ 0.15
VIM-205ENST00000485947 RELNP78509 3460 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 LOC102723996A0A087X1L8 192 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 A0A0A6YYC8 382 aaPredicted RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 CLEC18AA5D8T8 446 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 ERICH4A6NGS2 130 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 I3L1I5 382 aaPredicted RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 PSMD12O00232 456 aaPredicted RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 P2RX6O15547 441 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 HNRNPCL1O60812 293 aaKnown RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 ETHE1O95571 254 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 DIO3P55073 304 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 MLLT10P55197 1068 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 BNIP1Q12981 228 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 ADPRMQ3LIE5 342 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 VWA2Q5GFL6 755 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 GALNT18Q6P9A2 607 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 CYP20A1Q6UW02 462 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 CLEC18BQ6UXF7 455 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 Q6ZS92 163 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 TREML1Q86YW5 311 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 CLEC18CQ8NCF0 446 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 SRFBP1Q8NEF9 429 aaKnown RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 NT5CQ8TCD5 201 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 SLC13A3Q8WWT9 602 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 C11orf24Q96F05 449 aaPredicted RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 SYNPO2LQ9H987 977 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 ANKHQ9HCJ1 492 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 TAGLN3Q9UI15 199 aa16.01■□□□□ 0.15
VIM-205ENST00000485947 USP9YO00507 2555 aaPredicted RBP16.01■□□□□ 0.15
VIM-205ENST00000485947 PCSK5Q92824 1860 aa16■□□□□ 0.15
VIM-205ENST00000485947 NSG1A0A0A6YYJ2 146 aa16■□□□□ 0.15
VIM-205ENST00000485947 URADA6NGE7 173 aa16■□□□□ 0.15
VIM-205ENST00000485947 NDUFS4O43181 175 aa16■□□□□ 0.15
VIM-205ENST00000485947 BMP10O95393 424 aa16■□□□□ 0.15
VIM-205ENST00000485947 TBX6O95947 436 aaPredicted RBP16■□□□□ 0.15
VIM-205ENST00000485947 HEXBP07686 556 aa16■□□□□ 0.15
VIM-205ENST00000485947 ATXN8OSP0DMR3 200 aa16■□□□□ 0.15
VIM-205ENST00000485947 GPX3P22352 226 aa16■□□□□ 0.15
VIM-205ENST00000485947 CALB2P22676 271 aa16■□□□□ 0.15
VIM-205ENST00000485947 TIA1P31483 386 aaKnown RBP eCLIP16■□□□□ 0.15
VIM-205ENST00000485947 RAP1GDS1P52306 607 aa16■□□□□ 0.15
VIM-205ENST00000485947 FOXL2P58012 376 aa16■□□□□ 0.15
VIM-205ENST00000485947 STXBP1P61764 594 aaKnown RBP16■□□□□ 0.15
VIM-205ENST00000485947 RGS1Q08116 209 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms