RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SPATC1Q76KD6 591 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 OR8J3Q8NGG0 315 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 BTBD2Q9BX70 525 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 NAA50Q9GZZ1 169 aaKnown RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 ATG5Q9H1Y0 275 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 INIPQ9NRY2 104 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 ZNF230Q9UIE0 474 aaPredicted RBP12.78□□□□□ -0.36
USP40-208ENST00000450966 PCDHGA8Q9Y5G5 932 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 COLEC10Q9Y6Z7 277 aa12.78□□□□□ -0.36
USP40-208ENST00000450966 BEST1O76090 585 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 CTRB1P17538 263 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 PRKCHP24723 683 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 PITPNBP48739 271 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 TGM4P49221 684 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 PPP1R8Q12972 351 aaKnown RBP12.77□□□□□ -0.36
USP40-208ENST00000450966 KEAP1Q14145 624 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 CTRB2Q6GPI1 263 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 ARHGAP11AQ6P4F7 1023 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 ALKAL2Q6UX46 152 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 JAZF1Q86VZ6 243 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 OR10G6Q8NH81 332 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 SLC35B2Q8TB61 432 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 ZNF768Q9H5H4 540 aaKnown RBP12.77□□□□□ -0.36
USP40-208ENST00000450966 MYOM1P52179 1685 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 NPEPPSL1A6NEC2 478 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 AGAP14A8MT82 685 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 IMPA2O14732 288 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 CASC3O15234 703 aaKnown RBP12.77□□□□□ -0.36
USP40-208ENST00000450966 CBR1P16152 277 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 CDK5R2Q13319 367 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 POC1BQ8TC44 478 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 NECTIN4Q96NY8 510 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 PIGMQ9H3S5 423 aa12.77□□□□□ -0.36
USP40-208ENST00000450966 PRSS51A0A1B0GVH4 220 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 CPED1A4D0V7 1026 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 CPSF4LA6NMK7 179 aaKnown RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 B4GALT5O43286 388 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 CSKP41240 450 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 CBX2Q14781 532 aaPredicted RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 AANATQ16613 207 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 UGCGQ16739 394 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 DUSP7Q16829 419 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ENTHD1Q8IYW4 607 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ATP6V1C2Q8NEY4 427 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 MAGEH1Q9H213 219 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 RBFOX1Q9NWB1 397 aaKnown RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 GSKIPQ9P0R6 139 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ZFR2Q9UPR6 939 aaKnown RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 NID2Q14112 1375 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 NUDT19A8MXV4 375 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 MMP20O60882 483 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 DFFBO76075 338 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 MT-ND5P03915 603 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 CD34P28906 385 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 SLC1A2P43004 574 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 NPRL3Q12980 569 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 C2CD4CQ8TF44 421 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 MYO19Q96H55 970 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 OCSTAMPQ9BR26 566 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 B3GNT4Q9C0J1 378 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 DPEP2Q9H4A9 486 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 POT1Q9NUX5 634 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 MOCS1Q9NZB8 636 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ABI3Q9P2A4 366 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 POM121CA8CG34 1229 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 NPC1O15118 1278 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 PRAMEF12O95522 483 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 C22orf31O95567 290 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 JUNBP17275 347 aaPredicted RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 NFYAP23511 347 aaPredicted RBP12.77□□□□□ -0.37
USP40-208ENST00000450966 CRHBPP24387 322 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 KCNJ11Q14654 390 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 LRFN5Q96NI6 719 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ZNF251Q9BRH9 671 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 HEBP2Q9Y5Z4 205 aa12.77□□□□□ -0.37
USP40-208ENST00000450966 ERAL1O75616 437 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 CLDN9O95484 217 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 ALAS2P22557 587 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 KIAA0141Q14154 515 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 TRAM2Q15035 370 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 UBAP2Q5T6F2 1119 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 LRRC70Q7Z2Q7 622 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR2T11Q8NH01 316 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR6S1Q8NH40 331 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 RAB39BQ96DA2 213 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 GPER1Q99527 375 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 NANOGQ9H9S0 305 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 ARHGEF4Q9NR80 690 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TMPRSS4Q9NRS4 437 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 CLDND1Q9NY35 253 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 RBM7Q9Y580 266 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 GXYLT2A0PJZ3 443 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 J3QR89 54 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 CTPS1P17812 591 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 IDSP22304 550 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 MANFP55145 182 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 SP2Q02086 613 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 ZNF792Q3KQV3 632 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TMEM69Q5SWH9 247 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 GTF2IRD2BQ6EKJ0 949 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms