RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 C3orf38Q5JPI3 329 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 MANEAQ5SRI9 462 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 NOXRED1Q6NXP6 359 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 CARM1Q86X55 608 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 RIMKLAQ8IXN7 391 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 GPR135Q8IZ08 494 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 TMEM132CQ8N3T6 1108 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 RNF175Q8N4F7 328 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 DTWD1Q8N5C7 304 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 KRTCAP2Q8N6L1 136 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 CAMKVQ8NCB2 501 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 OR2T12Q8NG77 320 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 OR8K5Q8NH50 307 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 MRPS26Q9BYN8 205 aaKnown RBP12.71□□□□□ -0.37
LIMS1-204ENST00000409441 PAIP1Q9H074 479 aaKnown RBP12.71□□□□□ -0.37
LIMS1-204ENST00000409441 APMAPQ9HDC9 416 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 PISDQ9UG56 409 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 SATB2Q9UPW6 733 aa12.71□□□□□ -0.37
LIMS1-204ENST00000409441 RUVBL1Q9Y265 456 aaKnown RBP12.71□□□□□ -0.37
LIMS1-204ENST00000409441 MAGEB17A8MXT2 336 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FAM220BPB1ANY3 271 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 H3BMH7 237 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FOXE1O00358 373 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SOCS2O14508 198 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 P2RX6O15547 441 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SCELO95171 688 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 RASAL1O95294 804 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 TGFB1P01137 390 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FGF5P12034 268 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PRPS1L1P21108 318 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SERPINB1P30740 379 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ETV5P41161 510 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 MAPK10P53779 464 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FOXC1Q12948 553 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 LIN52Q52LA3 116 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PRAMEF17Q5VTA0 474 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PPP1R3BQ86XI6 285 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 MSRB3Q8IXL7 192 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ZNF655Q8N720 491 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 KCT2Q8NC54 265 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FAM110BQ8TC76 370 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 NT5CQ8TCD5 201 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 APIPQ96GX9 242 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 TAAR9Q96RI9 348 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 CPPED1Q9BRF8 314 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 BDH2Q9BUT1 245 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 UGT2B28Q9BY64 529 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 NLNQ9BYT8 704 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ANKRD60Q9BZ19 345 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 VPS29Q9UBQ0 182 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SPTBN4Q9H254 2564 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ELOVL7A1L3X0 281 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 HYKKA2RU49 373 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 LRIT2A6NDA9 550 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SAC3D1A6NKF1 404 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 GSTA4O15217 222 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SH3BGRLO75368 114 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 MYO1DO94832 1006 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 TBX6O95947 436 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SLC35G6P0C7Q6 338 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SMIM18P0DKX4 95 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 RAP2AP10114 183 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 HOXB9P17482 250 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PTX3P26022 381 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 TRPC1P48995 793 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 RPS13P62277 151 aaKnown RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PHEXP78562 749 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 MYBPC1Q00872 1141 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SRSF11Q05519 484 aaKnown RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 RGS1Q08116 209 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 HYAL2Q12891 473 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 GRM7Q14831 915 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ADRM1Q16186 407 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PRTGQ2VWP7 1150 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 FAM98BQ52LJ0 330 aaKnown RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 NHSL2Q5HYW2 709 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 DCAF12Q5T6F0 453 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 RNF220Q5VTB9 566 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 PWWP2BQ6NUJ5 590 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 DGLUCYQ7Z3D6 616 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 GPR180Q86V85 440 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 CALHM3Q86XJ0 350 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 EPHX4Q8IUS5 362 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 CLHC1Q8NHS4 586 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 NUDT8Q8WV74 236 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 TSSK3Q96PN8 268 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 THUMPD3Q9BV44 507 aaKnown RBP12.7□□□□□ -0.38
LIMS1-204ENST00000409441 OR51B5Q9H339 312 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SERHLQ9NQF3 203 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 DMRT3Q9NQL9 472 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ENAMQ9NRM1 1142 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SLC25A37Q9NYZ2 338 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 ZNF639Q9UID6 485 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 USP22Q9UPT9 525 aa12.7□□□□□ -0.38
LIMS1-204ENST00000409441 SMIM31A0A1B0GVY4 71 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ARHGAP10A1A4S6 786 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 FITM1A5D6W6 292 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ZSCAN9O15535 394 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ZNF749O43361 778 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 DEAF1O75398 565 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms