RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CD58P19256 250 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 SRMP19623 302 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 FDFT1P37268 417 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 THOP1P52888 689 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 HERV-K104P63124 156 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CSNK2A1P68400 391 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 NCBP1Q09161 790 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 PMPCAQ10713 525 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 ZC2HC1CQ53FD0 456 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 FAM76BQ5HYJ3 339 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CTSL3PQ5NE16 218 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 NCAPH2Q6IBW4 605 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 FAM109BQ6ICB4 259 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM65Q6PI78 240 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 RBM44Q6ZP01 1051 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 C16orf62Q7Z3J2 963 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 VTCN1Q7Z7D3 282 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LHFPL4Q7Z7J7 247 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CROCCP3Q8IVE0 287 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 FAM114A1Q8IWE2 563 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 GCSAMQ8N6F7 178 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 ARL14EPQ8N8R7 260 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LRRC57Q8N9N7 239 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CSNK2A3Q8NEV1 391 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 KCNG3Q8TAE7 436 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 RAET1EQ8TD07 263 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LKAAEAR1Q8TD35 194 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 UBTD2Q8WUN7 234 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 SLC44A1Q8WWI5 657 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LPAR1Q92633 364 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM45BQ96B21 275 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 SENP5Q96HI0 755 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 MARK4Q96L34 752 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 GUCD1Q96NT3 240 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 FCRL5Q96RD9 977 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CCNL2Q96S94 520 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 MSTO1Q9BUK6 570 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 KRTAP1-5Q9BYS1 174 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LRRC2Q9BYS8 371 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 NPFFR1Q9GZQ6 430 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 BLZF1Q9H2G9 400 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF160Q9HCG1 818 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 TREM1Q9NP99 234 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 SDHAF3Q9NRP4 125 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 NUDT15Q9NV35 164 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 GCNT4Q9P109 453 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 WDR83OSQ9Y284 106 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 TMED7Q9Y3B3 224 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 ZMYM6O95789 1325 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 ATXN2Q99700 1313 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 KIF13AQ9H1H9 1805 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 NUP160Q12769 1436 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 METTL21EPA6NDL7 271 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PCP4L1A6NKN8 68 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM150CB9EJG8 249 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FAM90A26D6RGX4 464 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NPIPA2E9PIF3 369 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF701M0R085 212 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 HSPB6O14558 160 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RPS6KA5O75582 802 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SORBS2O94875 1100 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CAVIN2O95810 425 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NHLRC4P0CG21 123 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SMIM18P0DKX4 95 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PRKAR1AP10644 381 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 UMPSP11172 480 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 DBTP11182 482 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FOSL2P15408 326 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TPSB2P20231 275 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CYP2B6P20813 491 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 UGT1A1P22309 533 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 FCARP24071 287 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 AXLP30530 894 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SSTR1P30872 391 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RPL9P32969 192 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NR0B1P51843 470 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 NAPAP54920 295 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 RWDD2BP57060 319 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 KCNK10P57789 538 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ZXDBP98169 803 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TRAP1Q12931 704 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PLA2G7Q13093 441 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GNA13Q14344 377 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 HERC3Q15034 1050 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 P2RY14Q15391 338 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TPSAB1Q15661 275 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 CAMK4Q16566 473 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PARP6Q2NL67 630 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM44Q2T9K0 475 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 AWAT1Q58HT5 328 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GRTP1Q5TC63 336 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 VSTM1Q6UX27 236 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SCARA5Q6ZMJ2 495 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 EIF3MQ7L2H7 374 aaKnown RBP3.78□□□□□ -1.8
HMGB1-204ENST00000399489 SMYD1Q8NB12 490 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 TRPV3Q8NET8 790 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 GLYATL2Q8WU03 294 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 ASZ1Q8WWH4 475 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PIBF1Q8WXW3 757 aa3.78□□□□□ -1.8
HMGB1-204ENST00000399489 PIGCQ92535 297 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms