RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 C5AR1P21730 350 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 GRIA1P42261 906 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ASPAP45381 313 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 RABIFP47224 123 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 STK19P49842 368 aaPredicted RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 RIDAP52758 137 aaKnown RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 KCNC4Q03721 635 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 GALNT1Q10472 559 aaPredicted RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 IL17AQ16552 155 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 VMACQ2NL98 169 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 RBM20Q5T481 1227 aaKnown RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 OR52E8Q6IFG1 317 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 NCEH1Q6PIU2 408 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ZDHHC14Q8IZN3 488 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 SORCS1Q8WY21 1168 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 NTPCRQ9BSD7 190 aaKnown RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 FGFBP2Q9BYJ0 223 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 TOR3AQ9H497 397 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 FBRSQ9HAH7 460 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 HIF1ANQ9NWT6 349 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 KLHL13Q9P2N7 655 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 GABRQQ9UN88 632 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 DHDHQ9UQ10 334 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 PTRH2Q9Y3E5 179 aaKnown RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 MICAL3Q7RTP6 2002 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 A0A087WUU8 490 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 AQP12BA6NM10 295 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 SSX5O60225 188 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 FESP07332 822 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 KCNE1P15382 129 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 GNB3P16520 340 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 IL32P24001 234 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ADH7P40394 386 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ACADVLP49748 655 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 IDH3AP50213 366 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ERVK-16P61578 105 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 SLAMF1Q13291 335 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 RAB31Q13636 194 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 USF2Q15853 346 aaPredicted RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 GPR157Q5UAW9 335 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 TMEM110Q86TL2 294 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 AQP12AQ8IXF9 295 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 OR8H3Q8N146 312 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 NUP43Q8NFH3 380 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 OR10T2Q8NGX3 314 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 FANK1Q8TC84 345 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ADAMTS18Q8TE60 1221 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 ZDHHC1Q8WTX9 485 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 RAB2BQ8WUD1 216 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 THAP4Q8WY91 577 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 NAT6Q93015 286 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 SLC6A7Q99884 636 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 DOHHQ9BU89 302 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 SLC22A4Q9H015 551 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 AKTIPQ9H8T0 292 aa6.91□□□□□ -1.3
UPF2-203ENST00000397053 TRNAU1APQ9NX07 287 aaKnown RBP6.91□□□□□ -1.3
UPF2-203ENST00000397053 LOC105369274A0A096LPK9 316 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 COCHO43405 550 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 ALDOAP04075 364 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 LCATP04180 440 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 C8BP07358 591 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 C1GALT1C1LP0DN25 315 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 AMY2BP19961 511 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 APLNRP35414 380 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 FRKP42685 505 aaPredicted RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 LEPRP48357 1165 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 PRKXP51817 358 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 RPS15AP62244 130 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 EVX2Q03828 476 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 KCNC3Q14003 757 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 NTRK2Q16620 822 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 SPANXN4Q5MJ08 99 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 MRPL21Q7Z2W9 205 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 GOLGA7Q7Z5G4 137 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 OR4N4Q8N0Y3 316 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 GALNT6Q8NCL4 622 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 DMRTB1Q96MA1 342 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 BARD1Q99728 777 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 HERPUD2Q9BSE4 406 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 FUCA2Q9BTY2 467 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 RPF2Q9H7B2 306 aaKnown RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 DKK3Q9UBP4 350 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 SLCO3A1Q9UIG8 710 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 RNF215Q9Y6U7 377 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 LCHNA4D1U4 455 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 DLX3O60479 287 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 PRAMEF11O60813 436 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 TPPPO94811 219 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 NDUFV2P19404 249 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 FPR1P21462 350 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 EDNRBP24530 442 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 SFTPDP35247 375 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 TNFRSF4P43489 277 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 STC1P52823 247 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 LMAN2Q12907 356 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 ANKDD1AQ495B1 522 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 MTFR2Q6P444 385 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 ZNF773Q6PK81 442 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 UBE2Q1Q7Z7E8 422 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 OR4N5Q8IXE1 308 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms