RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 HSD17B12Q53GQ0 312 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 SLC35F5Q8WV83 523 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 F2RL3Q96RI0 385 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 GPR22Q99680 433 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 GPR88Q9GZN0 384 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 GPR34Q9UPC5 381 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PRSS51A0A1B0GVH4 220 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 UNC119BA6NIH7 251 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 EEF1E1-BLOC1S5C9J1V9 151 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PRKCAP17252 672 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 CD53P19397 219 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TNFRSF1BP20333 461 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 CRYZQ08257 329 aaKnown RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PLCXD2Q0VAA5 305 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 MOGSQ13724 837 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 SLC16A9Q7RTY1 509 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 CMASQ8NFW8 434 aaPredicted RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PROKR1Q8TCW9 393 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ICKQ9UPZ9 632 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF14P17017 642 aaPredicted RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PIK3CBP42338 1070 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TMEM110Q86TL2 294 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TEX19Q8NA77 164 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 NPRL2Q8WTW4 380 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 SSX3Q99909 188 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 PFKLP17858 780 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 SELENOVP59797 346 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF630Q2M218 657 aaPredicted RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ASTE1Q2TB18 679 aaPredicted RBP13.16□□□□□ -0.3
COL4A1-201ENST00000375820 FBXO43Q4G163 708 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 NANOGP8Q6NSW7 305 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 NRROSQ86YC3 692 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 ELP5Q8TE02 316 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 NANOGQ9H9S0 305 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 CDH10Q9Y6N8 788 aa13.16□□□□□ -0.3
COL4A1-201ENST00000375820 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 UQCRC2P22695 453 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 RAB4BP61018 213 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ELOAQ14241 798 aaKnown RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 TRIM73Q86UV7 250 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF100Q8IYN0 542 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ZDHHC1Q8WTX9 485 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 A0A0U1RQK1 487 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 FAM221BA6H8Z2 402 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 F5H0A9 414 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 GSTT2P0CG29 244 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF30P17039 623 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 MAPK3P27361 379 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 OTX2P32243 289 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 DEFB110Q30KQ9 67 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 CENPSQ8N2Z9 138 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 C2CD4AQ8NCU7 369 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 SECISBP2Q96T21 854 aaKnown RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 TXNRD2Q9NNW7 524 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 COQ3Q9NZJ6 369 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 GPR52Q9Y2T5 361 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 KCNIP3Q9Y2W7 256 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 OR1A2Q9Y585 309 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 MROH2AA6NES4 1674 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 GGT2P36268 569 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 TIGD4Q8IY51 512 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 KIAA1191Q96A73 305 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 SPATA6Q9NWH7 488 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 MKLN1Q9UL63 735 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 C2orf74A8MZ97 194 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 H7C417 338 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 F8A1P23610 371 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 CTHP32929 405 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 EIF5AL1Q6IS14 154 aaKnown RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 TSGA13Q96PP4 275 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 AP1M2Q9Y6Q5 423 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 A0A0U1RQF3 1178 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 C2orf78A6NCI8 922 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ABCB7O75027 752 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 CD3GP09693 182 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 EPHA1P21709 976 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 EMX2Q04743 252 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 MEX3DQ86XN8 651 aaKnown RBP13.15□□□□□ -0.3
COL4A1-201ENST00000375820 SHDQ96IW2 340 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 HDHD5Q9BXW7 423 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 RGCCQ9H4X1 137 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF442Q9H7R0 627 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 MGAT4CQ9UBM8 478 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 PRELID1Q9Y255 219 aa13.15□□□□□ -0.3
COL4A1-201ENST00000375820 A0A0U1RQS6 177 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 IGLON5A6NGN9 336 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 PRAMEF11O60813 436 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 ANXA3P12429 323 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 HK3P52790 923 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 ZNF616Q08AN1 781 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 LMAN2Q12907 356 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 ABRAXAS2Q15018 415 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 CES4AQ5XG92 561 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 GLT8D1Q68CQ7 371 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 KCTD13Q8WZ19 329 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 PITX2Q99697 317 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 TMEM248Q9NWD8 314 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 SLC7A11Q9UPY5 501 aa13.14□□□□□ -0.31
COL4A1-201ENST00000375820 HTRA2O43464 458 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms