RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CCR10P46092 362 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ALDH3B2P48448 385 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RHOBP62745 196 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GALNT1Q10472 559 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 IRF5Q13568 498 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 UBAP2LQ14157 1087 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TGFBIQ15582 683 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DECR1Q16698 335 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZACNQ401N2 412 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 LRRC73Q5JTD7 316 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MFSD12Q6NUT3 480 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF852Q6ZMS4 543 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM185AQ8NFB2 350 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR10G3Q8NGC4 313 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PYDC1Q8WXC3 89 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FAM20AQ96MK3 541 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NT5DC2Q9H857 520 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PCYOX1Q9UHG3 505 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MAGEL2Q9UJ55 1249 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TRIP11Q15643 1979 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 EDC4Q6P2E9 1401 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MAST1Q9Y2H9 1570 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 C9orf172C9J069 976 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TP53I11O14683 189 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OXSR1O95747 527 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PTBP3O95758 552 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PFKMP08237 780 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF43P17038 809 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DNASE1P24855 282 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 AK4P27144 223 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 EMP2P54851 167 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GRM3Q14832 879 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GRM4Q14833 912 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM31Q5JXX7 168 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF468Q5VIY5 522 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM65Q6PI78 240 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TXNRD3Q86VQ6 643 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FBXO36Q8NEA4 188 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 AGBL3Q8NEM8 1001 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SOCS4Q8WXH5 440 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TIMD4Q96H15 378 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 VAT1Q99536 393 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MIEN1Q9BRT3 115 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NDFIP1Q9BT67 221 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NARFLQ9H6Q4 476 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 EPHA6Q9UF33 1036 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZFR2Q9UPR6 939 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TLR6Q9Y2C9 796 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CDHR2Q9BYE9 1310 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DUXAA6NLW8 204 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF670-ZNF695F2Z2N8 137 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FKBP6O75344 327 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CDK14O94921 469 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 HTR3BO95264 441 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 EPXP11678 715 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NELFEP18615 380 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 HADHBP55084 474 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BLOC1S1P78537 153 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SLBPQ14493 270 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 COL28A1Q2UY09 1125 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FAM74A1Q5RGS3 127 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SPOCD1Q6ZMY3 1216 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CYP4V2Q6ZWL3 525 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PCDH20Q8N6Y1 951 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PROKR1Q8TCW9 393 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SLC2A12Q8TD20 617 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RHBDD1Q8TEB9 315 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SLC7A6Q92536 515 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ITFG2Q969R8 447 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 C12orf43Q96C57 262 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SFRP2Q96HF1 295 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PIWIL1Q96J94 861 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PBDC1Q9BVG4 233 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DDX20Q9UHI6 824 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF490Q9ULM2 529 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZDHHC9Q9Y397 364 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 AKAP6Q13023 2319 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 A0A087X1B8 175 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 J3QR89 54 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ORC5O43913 435 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RP2O75695 350 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 STC2O76061 302 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 C8AP07357 584 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FAM163BP0C2L3 166 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GZMAP12544 262 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GCSHP23434 173 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TACR3P29371 465 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 HLCSP50747 726 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ARSDP51689 593 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CAP1Q01518 475 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PLPP7Q8NBV4 271 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PXT1Q8NFP0 134 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR6C4Q8NGE1 309 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR11L1Q8NGX0 322 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR1E3Q8WZA6 343 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BORCS5Q969J3 196 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RBP7Q96R05 134 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RTP3Q9BQQ7 232 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DEFB126Q9BYW3 111 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms