RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SFTPBP07988 381 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 HSD11B1P28845 292 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 BEX2Q9BXY8 128 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 GPRC5CQ9NQ84 441 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 COL3A1P02461 1466 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CCDC85CA6NKD9 419 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 HTR1BP28222 390 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MAGEA11P43364 429 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 THBS3P49746 956 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PUM1Q14671 1186 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SLC36A3Q495N2 470 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PPM1JQ5JR12 505 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ATAT1Q5SQI0 421 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 THAP7Q9BT49 309 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 OR51V1Q9H2C8 321 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 RPS10-NUDT3A0A1W2PQS6 291 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 RPS10P46783 165 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 TLE4Q04727 773 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 KDELC1Q6UW63 502 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 KCTD20Q7Z5Y7 419 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MRPL10Q7Z7H8 261 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PARP16Q8N5Y8 322 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SGK3Q96BR1 496 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 TAPBPLQ9BX59 468 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 A0A087WZY1 265 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SLC35G6P0C7Q6 338 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 BPIP17213 487 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MAP4K2Q12851 820 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SIGIRRQ6IA17 410 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 OR10K2Q6IF99 312 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PDE12Q6L8Q7 609 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 RBMS3Q6XE24 437 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MITD1Q8WV92 249 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ADAMTS14Q8WXS8 1223 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MAL2Q969L2 176 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 LRFN5Q96NI6 719 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PIH1D1Q9NWS0 290 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 COL1A2P08123 1366 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CPSF4LA6NMK7 179 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MSI1O43347 362 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 TAGLN2P37802 199 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CDK6Q00534 326 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MUL1Q969V5 352 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 CMTM7Q96FZ5 175 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SCPEP1Q9HB40 452 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 KCNIP2Q9NS61 270 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 TXNL4BQ9NX01 149 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 PI15O43692 258 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 AOC2O75106 756 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 MAKP20794 623 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 L1CAMP32004 1257 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 FBXL19Q6PCT2 694 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF561Q8N587 486 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 KIAA1191Q96A73 305 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 TMEM41AQ96HV5 264 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF251Q9BRH9 671 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 NOCTQ9UK39 431 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SCML1Q9UN30 329 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SLX4Q8IY92 1834 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 J3KR12 359 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 RPS12P25398 132 aaKnown RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 SLC17A1Q14916 467 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 HS6ST2Q96MM7 605 aa12.14□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF587Q96SQ5 575 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-203ENST00000353578 AKAP12Q02952 1782 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF254O75437 659 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 FGF19O95750 216 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 RHOQP17081 205 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 ENGP17813 658 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 CNTN2Q02246 1040 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 PAN3Q58A45 887 aaKnown RBP12.13□□□□□ -0.47
COL6A3-203ENST00000353578 NANOGP8Q6NSW7 305 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 RHOUQ7L0Q8 258 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 NPAS3Q8IXF0 933 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 NINJ1Q92982 152 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 NANOGQ9H9S0 305 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 GAPDHSO14556 408 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-203ENST00000353578 CELP19835 753 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 SPP2Q13103 211 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 OXA1LQ15070 435 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 DUSP7Q16829 419 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 FRG2Q64ET8 278 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 C22orf42Q6IC83 251 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 FRG2BQ96QU4 278 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 SCN3AQ9NY46 2000 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 MOXD2PA6NHM9 499 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 MEN1O00255 615 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 POU2F1P14859 743 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 ELK1P19419 428 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 DPY19L4Q7Z388 723 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 GLYATL1Q969I3 302 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 TSPAN10Q9H1Z9 355 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-203ENST00000353578 CSF3P09919 207 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 S100A11P31949 105 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 CEBPAP49715 358 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-203ENST00000353578 ASAH1Q13510 395 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 ZFP82Q8N141 532 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 GPR21Q99679 349 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 PCED1AQ9H1Q7 454 aa12.13□□□□□ -0.47
COL6A3-203ENST00000353578 FFAR2O15552 330 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms