RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 IRF9Q00978 393 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GPR139Q6DWJ6 353 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SUMF2Q8NBJ7 301 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 OR5B17Q8NGF7 314 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SLC38A1Q9H2H9 487 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ARHGEF15O94989 841 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SLC2A5P22732 501 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SLBPQ14493 270 aaKnown RBP eCLIP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 TMEM198Q66K66 360 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 METAP1DQ6UB28 335 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ACBD7Q8N6N7 88 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GALNT11Q8NCW6 608 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GJD4Q96KN9 370 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 CRTAC1Q9NQ79 661 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 DDX60Q8IY21 1712 aaKnown RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 UNGP13051 313 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GPR143P51810 404 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 RAB4BP61018 213 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ELP2Q6IA86 826 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 HMCESQ96FZ2 354 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 PWWP2AQ96N64 755 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 MUS81Q96NY9 551 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ENPP5Q9UJA9 477 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 NPC1O15118 1278 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GLUD1P00367 558 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 HTD2P86397 168 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 THEM6Q8WUY1 208 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SLC19A3Q9BZV2 496 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 TCEAL2Q9H3H9 227 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 PRMT8Q9NR22 394 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 HK3P52790 923 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 STC1P52823 247 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 LIPJQ5W064 366 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RNF130Q86XS8 419 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 C12orf45Q8N5I9 185 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR2AG1Q9H205 316 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF701Q9NV72 531 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 FAM118AQ9NWS6 357 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TCRBV7S2A1N4TA0A589 114 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 AFF3P51826 1226 aaKnown RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 PLA2G4EQ3MJ16 856 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 HES5Q5TA89 166 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 GLIS3Q8NEA6 775 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TRAPPC12Q8WVT3 735 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OSBPL2Q9H1P3 480 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 CD300AQ9UGN4 299 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 BOLA2-SMG1P6H3BVE0 249 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 WNT9AO14904 365 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RNASEH2AO75792 299 aaKnown RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 INAVAQ3KP66 663 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 IDO2Q6ZQW0 420 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 CACUL1Q86Y37 369 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR5H2Q8NGV7 314 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 WDR18Q9BV38 432 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 PLEKHM1Q9Y4G2 1056 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 A0A0D9SG52 128 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 HSD17B1P14061 328 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 GSTM4Q03013 218 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 LCN8Q6JVE9 175 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RFPL4BQ6ZWI9 263 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 SPARTQ8N0X7 666 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR2AP1Q8NGE2 309 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 SFXN5Q8TD22 340 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR51J1Q9H342 316 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 PEAK1Q9H792 1746 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 COL5A2P05997 1499 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TRBV2A0A0J9YWF9 115 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 JRKO75564 520 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RPS5P46782 204 aaKnown RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 GPR68Q15743 365 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RNASE10Q5GAN6 216 aaKnown RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 NANOGP8Q6NSW7 305 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 NIFKQ9BYG3 293 aaKnown RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR51I1Q9H343 314 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 NANOGQ9H9S0 305 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 GHRLQ9UBU3 117 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 SPATA31A1Q5TZJ5 1347 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 SGCEO43556 437 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TYRP14679 529 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 KEAP1Q14145 624 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 LRRC37A5PQ49AS3 106 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 PGM2L1Q6PCE3 622 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 DEFB128Q7Z7B8 93 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 LRRC28Q86X40 367 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TEX26Q8N6G2 289 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 OR2M2Q96R28 347 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 ACTRT3Q9BYD9 372 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RNF215Q9Y6U7 377 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 UNC119BA6NIH7 251 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 RNF13O43567 381 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 ALAS2P22557 587 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 EPHX2P34913 555 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TAF10Q12962 218 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 FAM182BQ5T319 152 aa13.73□□□□□ -0.21
COL7A1-201ENST00000328333 TEX10Q9NXF1 929 aaPredicted RBP13.73□□□□□ -0.21
COL7A1-201ENST00000328333 ARPC5O15511 151 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C4BPAP04003 597 aaKnown RBP13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TCEANCQ8N8B7 351 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SMPDL3AQ92484 453 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 KCNJ9Q92806 393 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms