RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RPS27AP62979 156 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 FKBP1BP68106 108 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 NAAAQ02083 359 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF85Q03923 595 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FOLH1Q04609 750 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CKAP4Q07065 602 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 RBBP4Q09028 425 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CAMK2DQ13557 499 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FASTKQ14296 549 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 PPA1Q15181 289 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RALBP1Q15311 655 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SLC22A6Q4U2R8 563 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 C14orf28Q4W4Y0 310 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RFTN2Q52LD8 501 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZRANB3Q5FWF4 1079 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TCP11X2Q5H9J9 407 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ARMCX4Q5H9R4 360 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FGD3Q5JSP0 725 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 MPP7Q5T2T1 576 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SHEQ5VZ18 495 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 KRTAP5-10Q6L8G5 202 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CAPN13Q6MZZ7 669 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 RHBDD2Q6NTF9 364 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF544Q6NX49 715 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SLC27A4Q6P1M0 643 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ARMCX5Q6P1M9 558 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 FUT10Q6P4F1 479 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 DCLRE1AQ6PJP8 1040 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SIGLEC15Q6ZMC9 328 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF600Q6ZNG1 722 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 GCNT7Q6ZNI0 430 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 C17orf107Q6ZR85 190 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CYP4V2Q6ZWL3 525 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 Q71RC1 249 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 CHST3Q7LGC8 479 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SPATA19Q7Z5L4 167 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SLFN11Q7Z7L1 901 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 VASH2Q86V25 355 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 NLRP14Q86W24 1093 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 AMIGO1Q86WK6 493 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SIAH3Q8IW03 269 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 LAX1Q8IWV1 398 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 AQP12AQ8IXF9 295 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 GPR65Q8IYL9 337 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 UBQLNLQ8IYU4 475 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CEND1Q8N111 149 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 OR8H2Q8N162 312 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CCAR2Q8N163 923 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 TTC30BQ8N4P2 665 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF525Q8N782 197 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TMEM99Q8N816 258 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF781Q8N8C0 355 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 BANPQ8N9N5 519 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CCDC63Q8NA47 563 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 IQUBQ8NA54 791 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SMYD1Q8NB12 490 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 UXS1Q8NBZ7 420 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CHDHQ8NE62 594 aaPredicted RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 OR1K1Q8NGR3 316 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 OR4F5Q8NH21 305 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 LINC01006Q8NI28 216 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 KIAA1524Q8TCG1 905 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 U2AF1L4Q8WU68 220 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 MRPS27Q92552 414 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 FAM104AQ969W3 186 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ESAMQ96AP7 390 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RMDN1Q96DB5 314 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SNRNP40Q96DI7 357 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 BPIFA2Q96DR5 249 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SGF29Q96ES7 293 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PGM2Q96G03 612 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF799Q96GE5 643 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ERO1AQ96HE7 468 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 VSIG2Q96IQ7 327 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 EPSTI1Q96J88 318 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PIWIL1Q96J94 861 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 CAPNS2Q96L46 248 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 SIGLEC12Q96PQ1 595 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 TNFRSF13CQ96RJ3 184 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ERGIC2Q96RQ1 377 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RAB40CQ96S21 281 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PLEKHF1Q96S99 279 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 HSD17B14Q9BPX1 270 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 NUDT16L1Q9BRJ7 211 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 ATG101Q9BSB4 218 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 GTPBP2Q9BX10 602 aaKnown RBP0.28□□□□□ -2.36
VPS35-212ENST00000640313 LRRCC1Q9C099 1032 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 STRADBQ9C0K7 418 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 WWP1Q9H0M0 922 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 CXXC4Q9H2H0 198 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 DPEP2Q9H4A9 486 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RABEP2Q9H5N1 569 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZDHHC6Q9H6R6 413 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 ZNF665Q9H7R5 613 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 RNF121Q9H920 327 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 WDR41Q9HAD4 459 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 PLEKHA3Q9HB20 300 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 S100A14Q9HCY8 104 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 AMBNQ9NP70 447 aa0.28□□□□□ -2.36
VPS35-212ENST00000640313 GPR173Q9NS66 373 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms