RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GOLGA6L10A6NI86 522 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 SAGE2PA6NJ88 616 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 A8MUA0 341 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 TMPRSS11DO60235 418 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 GUCY1B2O75343 617 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 IFNA16P05015 189 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 CASRP41180 1078 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 HNRNPH2P55795 449 aaKnown RBP19.39■□□□□ 0.69
CLN3-240ENST00000631023 TAS2R50P59544 299 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 TNFAIP8L3Q5GJ75 292 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 IGFL2Q6UWQ7 119 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 COMMD6Q7Z4G1 85 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 RBMXL3Q8N7X1 1067 aaKnown RBP19.39■□□□□ 0.69
CLN3-240ENST00000631023 KCNA7Q96RP8 456 aa19.39■□□□□ 0.69
CLN3-240ENST00000631023 A8MUI8 341 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 SLC28A2O43868 658 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 LDB3O75112 727 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 MYO1DO94832 1006 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 GBAP04062 536 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 NADK2Q4G0N4 442 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 ABHD17BQ5VST6 288 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 C18orf63Q68DL7 685 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 LINC00696Q6ZRV3 163 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 TMEM132CQ8N3T6 1108 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 EML4Q9HC35 981 aaKnown RBP19.38■□□□□ 0.69
CLN3-240ENST00000631023 ZBTB20Q9HC78 741 aaPredicted RBP19.38■□□□□ 0.69
CLN3-240ENST00000631023 VTI1BQ9UEU0 232 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 CLDN16Q9Y5I7 305 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 CLCA3PQ9Y6N3 262 aa19.38■□□□□ 0.69
CLN3-240ENST00000631023 FASNP49327 2511 aaKnown RBP19.38■□□□□ 0.69
CLN3-240ENST00000631023 NBASA2RRP1 2371 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 A0A1W2PR48 441 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 SERTM1A2A2V5 107 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 TM9SF1O15321 606 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 NPHS1O60500 1241 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 NR2F6P10588 404 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 UROSP10746 265 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 SOX11P35716 441 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 MAPK12P53778 367 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 ELAVL1Q15717 326 aaKnown RBP19.37■□□□□ 0.69
CLN3-240ENST00000631023 B3GNT7Q8NFL0 401 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 DAZLQ92904 295 aaKnown RBP19.37■□□□□ 0.69
CLN3-240ENST00000631023 PNPLA2Q96AD5 504 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 ZNF354BQ96LW1 612 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 MECRQ9BV79 373 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 MFRPQ9BY79 579 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 B3GNT3Q9Y2A9 372 aa19.37■□□□□ 0.69
CLN3-240ENST00000631023 PRRC2CQ9Y520 2896 aaKnown RBP19.37■□□□□ 0.69
CLN3-240ENST00000631023 DYTNA2CJ06 578 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 TGFBR3LH3BV60 316 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 TNNI3P19429 210 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 TPP2P29144 1249 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 HTR6P50406 440 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 FOXA1P55317 472 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 GALNT1Q10472 559 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 TBL3Q12788 808 aaKnown RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 H3F3CQ6NXT2 135 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 SLC5A8Q8N695 610 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 C1orf52Q8N6N3 182 aaKnown RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 NFAM1Q8NET5 270 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 ELP5Q8TE02 316 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 CHTF18Q8WVB6 975 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 ANKRD9Q96BM1 317 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 ZBTB9Q96C00 473 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 ACPTQ9BZG2 426 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 SHCBP1LQ9BZQ2 653 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 KCNK9Q9NPC2 374 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 RRAGDQ9NQL2 400 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 STMN3Q9NZ72 180 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 BPGMP07738 259 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 COX7A2P14406 83 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 SERPINB5P36952 375 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 ETV4P43268 484 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 ARG2P78540 354 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 CASP8Q14790 479 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 IMPG1Q17R60 797 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 SPIN4Q56A73 249 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 B3GNTL1Q67FW5 361 aaPredicted RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 SLC6A19Q695T7 634 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 NUDCD3Q8IVD9 361 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 DNAJB14Q8TBM8 379 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 RBM18Q96H35 190 aaKnown RBP19.36■□□□□ 0.69
CLN3-240ENST00000631023 SLAMF7Q9NQ25 335 aa19.36■□□□□ 0.69
CLN3-240ENST00000631023 AZIN1O14977 448 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 DYRK3O43781 588 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 FGF17O60258 216 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 ZWINTO95229 277 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 AIFM1O95831 613 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 CHN1P15882 459 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 SERPINB3P29508 390 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 CD97P48960 835 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 TRA2BP62995 288 aaKnown RBP19.35■□□□□ 0.69
CLN3-240ENST00000631023 IGLV3-21P80748 117 aaPredicted RBP19.35■□□□□ 0.69
CLN3-240ENST00000631023 HMGCS1Q01581 520 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 ID2Q02363 134 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 FOLH1Q04609 750 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 ACSM2AQ08AH3 577 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 MEP1AQ16819 746 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 SPDYAQ5MJ70 313 aa19.35■□□□□ 0.69
CLN3-240ENST00000631023 NDUFAF5Q5TEU4 345 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms