RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GAKO14976 1311 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 PASKQ96RG2 1323 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 PRAF2O60831 178 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 DUSP14O95147 198 aaKnown RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 CALCAP01258 141 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 SLC35E2P0CK97 266 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 RGS7P49802 495 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 RAB28P51157 221 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 CALD1Q05682 793 aaKnown RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 CRY2Q49AN0 593 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 PAN3Q58A45 887 aaKnown RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF658Q5TYW1 1059 aaPredicted RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 TATDN1Q6P1N9 297 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 PRPF39Q86UA1 669 aaKnown RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 APCDD1Q8J025 514 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 GPR137CQ8N3F9 429 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ARL14Q8N4G2 192 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF491Q8N8L2 437 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 CDHR1Q96JP9 859 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF558Q96NG5 402 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 MTIF3Q9H2K0 278 aaKnown RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ELL3Q9HB65 397 aaPredicted RBP1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF446Q9NWS9 450 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF175Q9Y473 711 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 HEG1Q9ULI3 1381 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 ARHGAP23Q9P227 1491 aa1.68□□□□□ -2.14
SCN1A-208ENST00000625916 SYNDIG1LA6NDD5 238 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 EMC8O43402 210 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 PDGFBP01127 241 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 LYNP07948 512 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 FCGR3AP08637 254 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 MYBL1P10243 752 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 PSG2P11465 335 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 ERCC2P18074 760 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 PPOXP50336 477 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 MFAP3P55082 362 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 AIMP1Q12904 312 aaKnown RBP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 BRINP3Q76B58 766 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 ENOSF1Q7L5Y1 443 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 OR13F1Q8NGS4 319 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 OR13C5Q8NGS8 318 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 SLC35C1Q96A29 364 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF274Q96GC6 653 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 TBX15Q96SF7 602 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 SLC25A39Q9BZJ4 359 aaPredicted RBP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 MAF1Q9H063 256 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 MED17Q9NVC6 651 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 IMPAD1Q9NX62 359 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 BCCIPQ9P287 314 aaKnown RBP eCLIP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 EXOC6BQ9Y2D4 811 aa1.67□□□□□ -2.14
SCN1A-208ENST00000625916 CFAP65Q6ZU64 1925 aaKnown RBP1.67□□□□□ -2.14
SCN1A-208ENST00000625916 KIR2DL5BA0A0G2JN68 375 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 KIR2DL5BA0A0G2JPC4 375 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 C2orf92A0A1B0GVN3 265 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 DIAPH2O60879 1101 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 DUSP11O75319 330 aaKnown RBP1.66□□□□□ -2.14
SCN1A-208ENST00000625916 CPT2P23786 658 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 HSPA4P34932 840 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF33BQ06732 778 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 SLC10A1Q14973 349 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 TAZQ16635 292 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 FAM174BQ3ZCQ3 159 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 ODF2Q5BJF6 829 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 LRRC73Q5JTD7 316 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 ERMARDQ5T6L9 678 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 MFSD4BQ5TF39 518 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 PLPP4Q5VZY2 271 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 CST9LP1Q5W188 147 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 CFAP161Q6P656 301 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF730Q6ZMV8 503 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 PLPPR4Q7Z2D5 763 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 ZNF677Q86XU0 584 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 TGIF2LYQ8IUE0 185 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 KIR2DL5AQ8N109 375 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 KCTD6Q8NC69 237 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 C8orf46Q8TAG6 207 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 EXT2Q93063 718 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 BPIFA2Q96DR5 249 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 AK8Q96MA6 479 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 FZD8Q9H461 694 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 S100A14Q9HCY8 104 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 TIGARQ9NQ88 270 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 KLK4Q9Y5K2 254 aa1.66□□□□□ -2.14
SCN1A-208ENST00000625916 RNF212BA8MTL3 300 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 P2RX6O15547 441 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 WISP3O95389 354 aaPredicted RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 HSPB1P04792 205 aaKnown RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 FYNP06241 537 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 FHP07954 510 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 FOSL2P15408 326 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 RPS2P15880 293 aaKnown RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 CDX1P47902 265 aaPredicted RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 CD47Q08722 323 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 ASAH1Q13510 395 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 QRICH1Q2TAL8 776 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 KRT80Q6KB66 452 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 BTNL8Q6UX41 500 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 SCARA5Q6ZMJ2 495 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 RBPMS2Q6ZRY4 209 aaKnown RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 NLRP14Q86W24 1093 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms