RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 L7N2F9 121 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 GTPBP1O00178 669 aaKnown RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 FFAR3O14843 346 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 GPR42O15529 346 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 GOSR1O95249 250 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 HLA-DQB1P01920 261 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 CKMT1AP12532 417 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 NCF1P14598 390 aaPredicted RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 SOX3P41225 446 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 PPP3R1P63098 170 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 PTPN11Q06124 597 aaPredicted RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 PUM1Q14671 1186 aaKnown RBP eCLIP7.59□□□□□ -1.2
VPS11-209ENST00000622309 DUOXA2Q1HG44 320 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 C19orf48Q6RUI8 117 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 AFTPHQ6ULP2 937 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 CTU1Q7Z7A3 348 aaKnown RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 GPR149Q86SP6 731 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 SPNS2Q8IVW8 549 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 PDZD9Q8IXQ8 264 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 COL26A1Q96A83 441 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 ULK4Q96C45 1275 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 FAM120BQ96EK7 910 aaKnown RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 TMEM68Q96MH6 324 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 CCM2Q9BSQ5 444 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 CHMP1AQ9HD42 196 aaPredicted RBP7.59□□□□□ -1.2
VPS11-209ENST00000622309 PDGFCQ9NRA1 345 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 MS4A12Q9NXJ0 267 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 UBP1Q9NZI7 540 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 VAPAQ9P0L0 249 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 HCN2Q9UL51 889 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 STUB1Q9UNE7 303 aa7.59□□□□□ -1.2
VPS11-209ENST00000622309 SYNJ2BP-COX16A0A087WUM0 186 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 DBX1A6NMT0 343 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 D6RAR5 112 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 GFRA2O00451 464 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 IL6P05231 212 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 PRF1P14222 555 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 GGT2P36268 569 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ATP5C1P36542 298 aaKnown RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 RFC3P40938 356 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SLC1A2P43004 574 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ZFP36L2P47974 494 aaKnown RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 PURAQ00577 322 aaKnown RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 SERINC3Q13530 473 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 TNFAIP1Q13829 316 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 TSNQ15631 228 aaKnown RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 KLHL26Q53HC5 615 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 CCDC157Q569K6 752 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SYPL2Q5VXT5 272 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ALKAL2Q6UX46 152 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SSX9Q7RTT3 188 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 CLDN22Q8N7P3 220 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 PROKR1Q8TCW9 393 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 NETO1Q8TDF5 533 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ELP5Q8TE02 316 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 OR2M2Q96R28 347 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SPRTNQ9H040 489 aaPredicted RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 ANKRD19PQ9H560 264 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ZNF408Q9H9D4 720 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 C14orf105Q9NVL8 296 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 POMT2Q9UKY4 750 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SLC9A8Q9Y2E8 581 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ZNF646O15015 1829 aaPredicted RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 LOC105369274A0A096LPK9 316 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 GSAPA4D1B5 854 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 J3QW42 95 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 CDC7O00311 574 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SCAMP1O15126 338 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 IL1AP01583 271 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 CD46P15529 392 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 P2RY4P51582 365 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 PGM5Q15124 567 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 AMHR2Q16671 573 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ZNF528Q3MIS6 628 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 MSANTD2Q6P1R3 559 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 TMEM88Q6PEY1 159 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SUSD1Q6UWL2 747 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ASB18Q6ZVZ8 466 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 OR4N4Q8N0Y3 316 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ZFP82Q8N141 532 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 B3GNT7Q8NFL0 401 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 ADAMTS14Q8WXS8 1223 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 NR4A3Q92570 626 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 WDR77Q9BQA1 342 aaPredicted RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 AGO4Q9HCK5 861 aaKnown RBP7.58□□□□□ -1.2
VPS11-209ENST00000622309 NUDT15Q9NV35 164 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 SLCO1C1Q9NYB5 712 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 MED11Q9P086 117 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 GPR160Q9UJ42 338 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 PIAS3Q9Y6X2 628 aa7.58□□□□□ -1.2
VPS11-209ENST00000622309 MTMR11A4FU01 709 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ARHGEF33A8MVX0 844 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ARVCFO00192 962 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DPYSL4O14531 572 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SIGLEC5O15389 551 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DNAJB6O75190 326 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 LGI1O95970 557 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SCG5P05408 212 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SPP1P10451 314 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CTPS1P17812 591 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms