RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ATP6V1HQ9UI12 483 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 NXT1Q9UKK6 140 aaKnown RBP13.52□□□□□ -0.25
UPF1-211ENST00000600868 CES1P1Q9UKY3 287 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 DCHS1Q96JQ0 3298 aa13.52□□□□□ -0.25
UPF1-211ENST00000600868 GABRR3A8MPY1 467 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 CLDN4O14493 209 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 FCHO1O14526 889 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 SLC22A2O15244 555 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 AKAP10O43572 662 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 B4GALT2O60909 372 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 PRKRAO75569 313 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 DCTN3O75935 186 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 ADRB1P08588 477 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 ZGLP1P0C6A0 271 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 DDX5P17844 614 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 SPINK2P20155 84 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 PPP2R1BP30154 601 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 STAT5AP42229 794 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 ALDH9A1P49189 494 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 HNRNPFP52597 415 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 NME5P56597 212 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 HSD17B7P56937 341 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 NCF4Q15080 339 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 VWA2Q5GFL6 755 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 MLIPQ5VWP3 458 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 SLC48A1Q6P1K1 146 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 FAM199XQ6PEV8 388 aaPredicted RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 PAOXQ6QHF9 649 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 CAMKMTQ7Z624 323 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 MTDHQ86UE4 582 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 DTX1Q86Y01 620 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 TICAM1Q8IUC6 712 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 TMEM52Q8NDY8 209 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 DNAJB14Q8TBM8 379 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 GFM2Q969S9 779 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 MIEF2Q96C03 454 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 TEX37Q96LM6 180 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 ZBTB18Q99592 522 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 PRPF18Q99633 342 aaKnown RBP13.51□□□□□ -0.25
UPF1-211ENST00000600868 MYLK2Q9H1R3 596 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 CLMPQ9H6B4 373 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 MIEF1Q9NQG6 463 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 PSME2Q9UL46 239 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 MMACHCQ9Y4U1 282 aa13.51□□□□□ -0.25
UPF1-211ENST00000600868 GLOD5A6NK44 160 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 CTNSO60931 367 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 CNOT3O75175 753 aaKnown RBP13.5□□□□□ -0.25
UPF1-211ENST00000600868 JRKO75564 520 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 CYC1P08574 325 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 IL12AP29459 219 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 SRSF11Q05519 484 aaKnown RBP13.5□□□□□ -0.25
UPF1-211ENST00000600868 ACTN3Q08043 901 aaPredicted RBP13.5□□□□□ -0.25
UPF1-211ENST00000600868 UBAP2LQ14157 1087 aaKnown RBP13.5□□□□□ -0.25
UPF1-211ENST00000600868 ERV3-1Q14264 604 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 UGT8Q16880 541 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 DPY19L1Q2PZI1 675 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 TBC1D25Q3MII6 688 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 CPTPQ5TA50 214 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 QSOX2Q6ZRP7 698 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 SCUBE1Q8IWY4 988 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 C7orf57Q8NEG2 295 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 OR9I1Q8NGQ6 314 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 CT55Q8WUE5 264 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 UCN3Q969E3 161 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 NKD1Q969G9 470 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 PPCDCQ96CD2 204 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 COQ8BQ96D53 544 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 LRRC37BQ96QE4 947 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 SPSB2Q99619 263 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 RBCK1Q9BYM8 510 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 PRTFDC1Q9NRG1 225 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 NUP210LQ5VU65 1888 aa13.5□□□□□ -0.25
UPF1-211ENST00000600868 FAM234BA2RU67 622 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 WASHC1A8K0Z3 465 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 C21orf140B9A014 251 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 TERTO14746 1132 aaKnown RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 CDC123O75794 336 aaPredicted RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 KLF7O75840 302 aaPredicted RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 GPR75O95800 540 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 LIPCP11150 499 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 COX7A2P14406 83 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 TCN2P20062 427 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 ZFP36L2P47974 494 aaKnown RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 RHAGQ02094 409 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 KLF10Q13118 480 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 BIKQ13323 160 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 AGKQ53H12 422 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 FUNDC1Q8IVP5 155 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 SAMD14Q8IZD0 417 aaPredicted RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 NATD1Q8N6N6 113 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 PLPP5Q8NEB5 264 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 OR7A2PQ8NGA2 310 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 OR8J2Q8NGG1 315 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 ANKRD9Q96BM1 317 aaPredicted RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 SLC45A3Q96JT2 553 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 CCDC106Q9BWC9 280 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 GPR87Q9BY21 358 aa13.49□□□□□ -0.25
UPF1-211ENST00000600868 BHLHE41Q9C0J9 482 aaPredicted RBP13.49□□□□□ -0.25
UPF1-211ENST00000600868 VN1R1Q9GZP7 353 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms