RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 A0A1W2PRB8 838 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 I3L1I5 382 aaPredicted RBP21.04■□□□□ 0.96
ATG4D-209ENST00000588857 GSNP06396 782 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 CDKN2CP42773 168 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 ACY1Q03154 408 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 COL9A2Q14055 689 aaPredicted RBP21.04■□□□□ 0.96
ATG4D-209ENST00000588857 PRSS53Q2L4Q9 553 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 PIGGQ5H8A4 983 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 TLDC1Q6P9B6 456 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 SLC15A3Q8IY34 581 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 OR4A15Q8NGL6 344 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 OR1L3Q8NH93 324 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 ANKRD27Q96NW4 1050 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 SH3GL1Q99961 368 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 SLC7A8Q9UHI5 535 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 PACSIN3Q9UKS6 424 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 PSME2Q9UL46 239 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 CLCA2Q9UQC9 943 aa21.04■□□□□ 0.96
ATG4D-209ENST00000588857 PGRMC2O15173 223 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 RDH16O75452 317 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 PRKRAO75569 313 aaKnown RBP21.03■□□□□ 0.96
ATG4D-209ENST00000588857 AVPR1BP47901 424 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 CEACAM7Q14002 265 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 MPEG1Q2M385 716 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 C6orf163Q5TEZ5 329 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 SLC48A1Q6P1K1 146 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 ZNF621Q6ZSS3 439 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 HPS6Q86YV9 775 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 RNF148Q8N7C7 305 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 FAM13CQ8NE31 585 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 OR8J3Q8NGG0 315 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 UCN3Q969E3 161 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 TMEM125Q96AQ2 219 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 SLC35C2Q9NQQ7 365 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 CUTCQ9NTM9 273 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 SLC25A37Q9NYZ2 338 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 ABCD2Q9UBJ2 740 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 VPS4AQ9UN37 437 aa21.03■□□□□ 0.96
ATG4D-209ENST00000588857 H3BMH7 237 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 DNAJB6O75190 326 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 ERAL1O75616 437 aaKnown RBP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 MED26O95402 600 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 NSA2O95478 260 aaKnown RBP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 C6orf47O95873 294 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 ME2P23368 584 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 TRA2AQ13595 282 aaKnown RBP eCLIP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 RABL3Q5HYI8 236 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 FAM180BQ6P0A1 224 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 SLITRK4Q8IW52 837 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 CA13Q8N1Q1 262 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 OR5T3Q8NGG3 340 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 CCDC124Q96CT7 223 aaKnown RBP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 ZNF501Q96CX3 271 aaPredicted RBP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 ZBED6CLQ96FA7 236 aaPredicted RBP21.02■□□□□ 0.96
ATG4D-209ENST00000588857 CDC6Q99741 560 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 NDC1Q9BTX1 674 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 TRIM8Q9BZR9 551 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 SLC6A13Q9NSD5 602 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 GIMAP4Q9NUV9 329 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 CMTM6Q9NX76 183 aa21.02■□□□□ 0.96
ATG4D-209ENST00000588857 TRBV5-3A0A0A0MS03 114 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 NME4O00746 187 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 FOXS1O43638 330 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 ABCB1P08183 1280 aaPredicted RBP21.02■□□□□ 0.95
ATG4D-209ENST00000588857 PTPN6P29350 595 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 NTSP30990 170 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 MANFP55145 182 aaKnown RBP21.02■□□□□ 0.95
ATG4D-209ENST00000588857 SPATS1Q496A3 300 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 GTDC1Q4AE62 458 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 RUNDC3AQ59EK9 446 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 OR52E8Q6IFG1 317 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 MSRB3Q8IXL7 192 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 BBS4Q96RK4 519 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 THUMPD3Q9BV44 507 aaKnown RBP21.02■□□□□ 0.95
ATG4D-209ENST00000588857 RPF2Q9H7B2 306 aaKnown RBP21.02■□□□□ 0.95
ATG4D-209ENST00000588857 CLK4Q9HAZ1 481 aaKnown RBP21.02■□□□□ 0.95
ATG4D-209ENST00000588857 PRDM9Q9NQV7 894 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 ENTPD4Q9Y227 616 aa21.02■□□□□ 0.95
ATG4D-209ENST00000588857 CHST10O43529 356 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 CBFA2T3O75081 653 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 KCNK5O95279 499 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 ARSFP54793 590 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 PCBP4P57723 403 aaKnown RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 RAB38P57729 211 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 MTPNP58546 118 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 HBA1P69905 142 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 ELF3P78545 371 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 SHC2P98077 582 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 C1orf146Q5VVC0 180 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 YOD1Q5VVQ6 348 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 TTLL10Q6ZVT0 673 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 NET1Q7Z628 596 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 TRIML2Q8N7C3 387 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 GOT1L1Q8NHS2 421 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 OR5P2Q8WZ92 322 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 MMABQ96EY8 250 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 OR6C1Q96RD1 312 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 CSF3RQ99062 836 aa21.01■□□□□ 0.95
ATG4D-209ENST00000588857 ACSS1Q9NUB1 689 aaPredicted RBP21.01■□□□□ 0.95
ATG4D-209ENST00000588857 TAS2R9Q9NYW1 312 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms