RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	BCAS4	Q8TDM0	211 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TSLP	Q969D9	159 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	UBE2E3	Q969T4	207 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	MS4A6E	Q96DS6	147 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	C19orf60	Q96EN9	201 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	SMIM10	Q96HG1	83 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	IMMP1L	Q96LU5	166 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PTCHD1	Q96NR3	888 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	CDK15	Q96Q40	435 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	SPEN	Q96T58	3664 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ELAC2	Q9BQ52	826 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	SLC29A3	Q9BZD2	475 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	FAM107B	Q9H098	131 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ACTR8	Q9H981	624 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PLA2G3	Q9NZ20	509 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	MARCO	Q9UEW3	520 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TEKT2	Q9UIF3	430 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF490	Q9ULM2	529 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	COPG1	Q9Y678	874 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	USH1C	Q9Y6N9	552 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	NBAS	A2RRP1	2371 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TMEM233	B4DJY2	109 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	FAM227A	F5H4B4	570 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	B3GALT2	O43825	422 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	CRCP	O75575	148 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	GNLY	P22749	145 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	FOXA1	P55317	472 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	BTG2	P78543	158 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	GABPB1	Q06547	395 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF169	Q14929	603 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	TERF2	Q15554	542 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	EXT1	Q16394	746 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	ABHD17B	Q5VST6	288 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	PLAG1	Q6DJT9	500 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	ADNP2	Q6IQ32	1131 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	MED27	Q6P2C8	311 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	PAPD4	Q6PIY7	484 aa	Known RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	SPATA21	Q7Z572	469 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	CA13	Q8N1Q1	262 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	AMER2	Q8N7J2	671 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	CDYL2	Q8N8U2	506 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	GALNT11	Q8NCW6	608 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	CATSPER1	Q8NEC5	780 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	AGR3	Q8TD06	166 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF473	Q8WTR7	871 aa	Known RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	STON2	Q8WXE9	905 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	PSMF1	Q92530	271 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	SNRNP40	Q96DI7	357 aa	Known RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	F2RL3	Q96RI0	385 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	KCNA7	Q96RP8	456 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	LPAR4	Q99677	370 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	AICDA	Q9GZX7	198 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	RABEP2	Q9H5N1	569 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	COPS7B	Q9H9Q2	264 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	KCNK13	Q9HB14	408 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	NPHS2	Q9NP85	383 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	STMN3	Q9NZ72	180 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	RNF11	Q9Y3C5	154 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	DNAJC15	Q9Y5T4	150 aa		13.59	□□□□□ -0.23
COMMD4-225	ENST00000569245	TRPC5OS	A6NMA1	111 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	C4orf51	C9J302	202 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	NDUFAB1	O14561	156 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	F10	P00742	488 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	CD22	P20273	847 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	MAOA	P21397	527 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	ARL1	P40616	181 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	AQP5	P55064	265 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	ZNF33B	Q06732	778 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	CLEC6A	Q6EIG7	209 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	GRHL2	Q6ISB3	625 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	EPGN	Q6UW88	154 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	MAVS	Q7Z434	540 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	VN1R5	Q7Z5H4	357 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	OR2L5	Q8NG80	312 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	OR1N1	Q8NGS0	311 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	RFWD2	Q8NHY2	731 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	METTL6	Q8TCB7	284 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	CCT7	Q99832	543 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	NPL	Q9BXD5	320 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	PRDM9	Q9NQV7	894 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	ASF1B	Q9NVP2	202 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	PCDHGA10	Q9Y5H3	936 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	FLNC	Q14315	2725 aa		13.58	□□□□□ -0.24
COMMD4-225	ENST00000569245	SCN3A	Q9NY46	2000 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	FLNB	O75369	2602 aa	Known RBP	13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245		H0YIV9	168 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	SH3BGRL	O75368	114 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	CHEK2	O96017	543 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	SERPINB3	P29508	390 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	HMOX2	P30519	316 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	SOX11	P35716	441 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	UQCRFS1	P47985	274 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	ARFIP2	P53365	341 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	DDX39B	Q13838	428 aa	Known RBP	13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	RUNX2	Q13950	521 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	FCRLB	Q6BAA4	426 aa		13.57	□□□□□ -0.24
COMMD4-225	ENST00000569245	ABHD17C	Q6PCB6	329 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms