RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR14A16Q8NHC5 309 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 SREK1Q8WXA9 508 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 ANKRD9Q96BM1 317 aaPredicted RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 MTFMTQ96DP5 389 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 GPR137Q96N19 417 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 OR8D2Q9GZM6 311 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 NOL11Q9H8H0 719 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 SUCOQ9UBS9 1254 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 ZNF180Q9UJW8 692 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 TMCO1Q9UM00 188 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 NFU1Q9UMS0 254 aa19.3■□□□□ 0.68
CLN3-219ENST00000565778 KLF13Q9Y2Y9 288 aaPredicted RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 SPTBN1Q01082 2364 aaKnown RBP19.3■□□□□ 0.68
CLN3-219ENST00000565778 C17orf105B2RV13 164 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 PLPP1O14494 284 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 ASNA1O43681 348 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 SLC19A2O60779 497 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 SMIM24O75264 130 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 MAGEA12P43365 314 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 NEK2P51955 445 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 CCNG1P51959 295 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 TSNAXIP1Q2TAA8 658 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 LGSNQ5TDP6 509 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 IFT20Q8IY31 132 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 CPSF7Q8N684 471 aaKnown RBP19.29■□□□□ 0.68
CLN3-219ENST00000565778 L3MBTL4Q8NA19 623 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 DCAKDQ8WVC6 231 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 ISL2Q96A47 359 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 RPF2Q9H7B2 306 aaKnown RBP19.29■□□□□ 0.68
CLN3-219ENST00000565778 ERVK-11Q9UQG0 969 aa19.29■□□□□ 0.68
CLN3-219ENST00000565778 WWP2O00308 870 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 OR2J2O76002 312 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 SNRPAP09012 282 aaKnown RBP19.28■□□□□ 0.68
CLN3-219ENST00000565778 COX7A2P14406 83 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 CA7P43166 264 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 C18orf63Q68DL7 685 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 ZNF787Q6DD87 383 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 IL20RBQ6UXL0 311 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 MDGA2Q7Z553 956 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 SULF2Q8IWU5 870 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 TANKQ92844 425 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 RBM18Q96H35 190 aaKnown RBP19.28■□□□□ 0.68
CLN3-219ENST00000565778 MAGED4Q96JG8 741 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 DGAT2Q96PD7 388 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 CDK15Q96Q40 435 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 PSD3Q9NYI0 1048 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 MYOTQ9UBF9 498 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 XPR1Q9UBH6 696 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 PHF11Q9UIL8 331 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 ATG4BQ9Y4P1 393 aa19.28■□□□□ 0.68
CLN3-219ENST00000565778 EXOC1LA0A1B0GW35 172 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 TMEM200CA6NKL6 621 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 A8MVJ9 347 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 FOXE1O00358 373 aaPredicted RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 OR7A17O14581 309 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 PEX1O43933 1283 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 FGF17O60258 216 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 ESRRAP11474 423 aaPredicted RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 ZNF24P17028 368 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 MEOX1P50221 254 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 ARFIP1P53367 373 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 BIKQ13323 160 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 CUL3Q13618 768 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 RNFT1Q5M7Z0 435 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 TTC19Q6DKK2 380 aaPredicted RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 MTFR2Q6P444 385 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 CYP20A1Q6UW02 462 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 SPPL2CQ8IUH8 684 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 ZCCHC7Q8N3Z6 543 aaKnown RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 ZNF321PQ8N8H1 164 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 OR5L2Q8NGL0 311 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 WDR20Q8TBZ3 569 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 SLC2A12Q8TD20 617 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 ASB15Q8WXK1 588 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 PPWD1Q96BP3 646 aaKnown RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 MRPL57Q9BQC6 102 aaKnown RBP19.27■□□□□ 0.68
CLN3-219ENST00000565778 TIMMDC1Q9NPL8 285 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 HPF1Q9NWY4 346 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 COPS7AQ9UBW8 275 aa19.27■□□□□ 0.68
CLN3-219ENST00000565778 STX16-NPEPL1H3BU86 382 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 STX16O14662 325 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 PROM1O43490 865 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 DYRK3O43781 588 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 EEDO75530 441 aaKnown RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 ETHE1O95571 254 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 DCTP40126 519 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 BUD31P41223 144 aaPredicted RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 HNRNPH2P55795 449 aaKnown RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 RNF4P78317 190 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 FOLH1Q04609 750 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 C3AR1Q16581 482 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 TEX35Q5T0J7 233 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 MILR1Q7Z6M3 343 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 SIAH3Q8IW03 269 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 GHDCQ8N2G8 530 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 POGLUT1Q8NBL1 392 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 OR52B6Q8NGF0 335 aa19.26■□□□□ 0.67
CLN3-219ENST00000565778 TRIM44Q96DX7 344 aaPredicted RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 SENP5Q96HI0 755 aaPredicted RBP19.26■□□□□ 0.67
CLN3-219ENST00000565778 NSUN5Q96P11 429 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms