RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CCNT2O60583 730 aaKnown RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 ZNF354AO60765 605 aaPredicted RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 LDB3O75112 727 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 ETHE1O95571 254 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 IGHG3P01860 377 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 S100BP04271 92 aaPredicted RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 CNR1P21554 472 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 HIST1H1TP22492 207 aaPredicted RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 SERPINB1P30740 379 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 CHRNB4P30926 498 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 SPRP35270 261 aaPredicted RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 IGLV3-21P80748 117 aaPredicted RBP15.86■□□□□ 0.13
CLN3-216ENST00000565316 TFF3Q07654 80 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 DLG1Q12959 904 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 ZNF750Q32MQ0 723 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 GRTP1Q5TC63 336 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 NDUFAF5Q5TEU4 345 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 SLC22A16Q86VW1 577 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 GOLM1Q8NBJ4 401 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 OR5L2Q8NGL0 311 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 SLC2A12Q8TD20 617 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 ZNF721Q8TF20 911 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 SCYL1Q96KG9 808 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 FAM173AQ9BQD7 235 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 TTTY12Q9BZ98 90 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 PHACTR1Q9C0D0 580 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 DPH5Q9H2P9 285 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 ALG9Q9H6U8 611 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 NUDT4Q9NZJ9 180 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 RNF6Q9Y252 685 aa15.86■□□□□ 0.13
CLN3-216ENST00000565316 MTORP42345 2549 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 FAM166BA8MTA8 275 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 ACOT7O00154 380 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 RTCAO00442 366 aaKnown RBP15.85■□□□□ 0.13
CLN3-216ENST00000565316 SLC35E2BP0CK96 405 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 TNNI3P19429 210 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 GMPRP36959 345 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 PLGLB1Q02325 96 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 TLE4Q04727 773 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 FOXO1Q12778 655 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 TESK1Q15569 626 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 MPEG1Q2M385 716 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 HYAL4Q2M3T9 481 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 AP5B1Q2VPB7 878 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 MED27Q6P2C8 311 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 GK5Q6ZS86 529 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 CHSY3Q70JA7 882 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 MAATS1Q7Z4T9 603 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 RPRMLQ8N4K4 120 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 SPATA4Q8NEY3 305 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 OR7G3Q8NG95 312 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 CHTF18Q8WVB6 975 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 RND1Q92730 232 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 ATOH8Q96SQ7 321 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 IL1RL2Q9HB29 575 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 NMRAL1Q9HBL8 299 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 NPDC1Q9NQX5 325 aaPredicted RBP15.85■□□□□ 0.13
CLN3-216ENST00000565316 IGSF5Q9NSI5 407 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 SPACA6W5XKT8 324 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 SPG11Q96JI7 2443 aa15.85■□□□□ 0.13
CLN3-216ENST00000565316 A0A1B0GVC2 190 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 OR14I1A6ND48 311 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 K7EPI3 171 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 RAD51CO43502 376 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 KERAO60938 352 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 TOXO94900 526 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 IGKV3-11P04433 115 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 CRABP2P29373 138 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 STT3AP46977 705 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 ID2Q02363 134 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 BIKQ13323 160 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 KBTBD12Q3ZCT8 623 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 GXYLT1Q4G148 440 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 PIGGQ5H8A4 983 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 DEPDC1Q5TB30 811 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 KHDRBS2Q5VWX1 349 aaKnown RBP15.84■□□□□ 0.13
CLN3-216ENST00000565316 OPN5Q6U736 354 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 ACAD11Q709F0 780 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 NUBPLQ8TB37 319 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 EXT2Q93063 718 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 CMTM7Q96FZ5 175 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 SENP5Q96HI0 755 aaPredicted RBP15.84■□□□□ 0.13
CLN3-216ENST00000565316 SH2D2AQ9NP31 389 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 ADGRE2Q9UHX3 823 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 TSC22D4Q9Y3Q8 395 aa15.84■□□□□ 0.13
CLN3-216ENST00000565316 DNAJC13O75165 2243 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 NF1P21359 2839 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 NPIPA2E9PIF3 369 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 NPIPA3F8WFD2 350 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 G3V3Y1 287 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 FGF17O60258 216 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 FAM155BO75949 473 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 TGFB1P01137 390 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PCNAP12004 261 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 MTHFD2P13995 350 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 CPN2P22792 545 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PIK3CBP42338 1070 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 SSR2P43308 183 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 NUP107P57740 925 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PMPCAQ10713 525 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms