RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RGMAQ96B86 450 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 CCDC120Q96HB5 630 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 TSPAN10Q9H1Z9 355 aaPredicted RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 DDX31Q9H8H2 851 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 LIN28AQ9H9Z2 209 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 MYOTQ9UBF9 498 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 PCTPQ9UKL6 214 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 FBXW2Q9UKT8 454 aa13.82□□□□□ -0.2
CLN3-213ENST00000565047 YARS2Q9Y2Z4 477 aaKnown RBP13.82□□□□□ -0.2
CLN3-213ENST00000565047 NPIPA5E9PKD4 350 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 STX16-NPEPL1H3BU86 382 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 STX16O14662 325 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 TMPRSS11DO60235 418 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 EEDO75530 441 aaKnown RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 RBP1P09455 135 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 COL6A2P12110 1019 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 PTX3P26022 381 aaPredicted RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 SSR2P43308 183 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 SERPINB9P50453 376 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 NEK2P51955 445 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 ID2Q02363 134 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 STX4Q12846 297 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 C3AR1Q16581 482 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 CPSF6Q16630 551 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLN3-213ENST00000565047 C18orf63Q68DL7 685 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 KLC3Q6P597 504 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 GPR180Q86V85 440 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 SPPL2CQ8IUH8 684 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 OR4N5Q8IXE1 308 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 PTGR2Q8N8N7 351 aaPredicted RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 ZFP62Q8NB50 900 aaPredicted RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 OR14A16Q8NHC5 309 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 SLC2A12Q8TD20 617 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 DAZLQ92904 295 aaKnown RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 NSUN5Q96P11 429 aaKnown RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 CDK15Q96Q40 435 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 RASL10BQ96S79 203 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 NTMT1Q9BV86 223 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 TXLNGYQ9BZA5 131 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 NOL11Q9H8H0 719 aaKnown RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 ACTR8Q9H981 624 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 DEPPQ9NTK1 212 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 CPSF2Q9P2I0 782 aaKnown RBP13.81□□□□□ -0.2
CLN3-213ENST00000565047 NPIPA1Q9UND3 350 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 CLCA3PQ9Y6N3 262 aa13.81□□□□□ -0.2
CLN3-213ENST00000565047 TRGV8A0A0C4DH27 118 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 A0A1W2PR48 441 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 C17orf105B2RV13 164 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 ZNHIT1O43257 154 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 PRKRAO75569 313 aaKnown RBP13.8□□□□□ -0.2
CLN3-213ENST00000565047 OR2J2O76002 312 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 OR6B1O95007 311 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 CLDN9O95484 217 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 IFNA16P05015 189 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 INHBAP08476 426 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 ABHD2P08910 425 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 CPN2P22792 545 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 CNTFP26441 200 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 STT3AP46977 705 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 PIK3CGP48736 1102 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 HK2P52789 917 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 RNF4P78317 190 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 ADORA2A-AS1P86434 159 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 TRAF3Q13114 568 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 DDX39BQ13838 428 aaKnown RBP13.8□□□□□ -0.2
CLN3-213ENST00000565047 HSDL2Q6YN16 418 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 TIFABQ6ZNK6 161 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 CYP4Z2PQ8N1L4 340 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 UHMK1Q8TAS1 419 aaKnown RBP13.8□□□□□ -0.2
CLN3-213ENST00000565047 UCN3Q969E3 161 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 PHF21BQ96EK2 531 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 C1QTNF3Q9BXJ4 246 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 EPB41L4BQ9H329 900 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 RPF2Q9H7B2 306 aaKnown RBP13.8□□□□□ -0.2
CLN3-213ENST00000565047 PLSCR2Q9NRY7 297 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 MS4A12Q9NXJ0 267 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 XPR1Q9UBH6 696 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 TINAGQ9UJW2 476 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 ZNF225Q9UK10 706 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 CENPEQ02224 2701 aa13.8□□□□□ -0.2
CLN3-213ENST00000565047 A0A087WUV0 522 aaPredicted RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 PINLYPA6NC86 204 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 TRIM49D1C9J1S8 452 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 HRKO00198 91 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 CCL21O00585 134 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 PPP6CO00743 305 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 ADAM10O14672 748 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 PEX1O43933 1283 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 RPS17P08708 135 aaKnown RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 ZNF24P17028 368 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 MEOX1P50221 254 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 SSR4P51571 173 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 NR0B1P51843 470 aaKnown RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 HSF1Q00613 529 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 TNFRSF17Q02223 184 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 FOLH1Q04609 750 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 ART3Q13508 389 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 CMPK2Q5EBM0 449 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 ADGRD1Q6QNK2 874 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 GPALPP1Q8IXQ4 340 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms