RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 RUNX2Q13950 521 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 DHX34Q14147 1143 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 BBS9Q3SYG4 887 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 NSUN5P2Q63ZY6 315 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 DUPD1Q68J44 220 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 UGT3A1Q6NUS8 523 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 PODNL1Q6PEZ8 512 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 LUZP2Q86TE4 346 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 DENND6AQ8IWF6 608 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF595Q8IYB9 648 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 PM20D2Q8IYS1 436 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 MYO1HQ8N1T3 1032 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 LRRC25Q8N386 305 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 RASGEF1CQ8N431 466 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 GPATCH11Q8N954 259 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 LRRC57Q8N9N7 239 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 ANKRD53Q8N9V6 530 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TMEM52Q8NDY8 209 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 FAM13CQ8NE31 585 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 OR8K3Q8NH51 312 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 OR14A16Q8NHC5 309 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 GABPB2Q8TAK5 448 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SLC22A8Q8TCC7 542 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 PTPMT1Q8WUK0 201 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 EEF1AKMT1Q8WVE0 214 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SLC5A11Q8WWX8 675 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TMEM158Q8WZ71 300 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 CCT6BQ92526 530 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 NEIL2Q969S2 332 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF669Q96BR6 464 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 SMIM10Q96HG1 83 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TSNARE1Q96NA8 513 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 OR4K3Q96R72 315 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TIMP4Q99727 224 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 AIF1LQ9BQI0 150 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 WDR83Q9BRX9 315 aaKnown RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 ALOXE3Q9BYJ1 711 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 TRIM54Q9BYV2 358 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 FRMD8P1Q9BZ68 369 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 QPCTLQ9NXS2 382 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 ARL15Q9NXU5 204 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 GALNT8Q9NY28 637 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 C6orf203Q9P0P8 240 aaPredicted RBP6.73□□□□□ -1.33
VPS4A-203ENST00000564399 COPS7AQ9UBW8 275 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 NDRG3Q9UGV2 375 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 DYRK1BQ9Y463 629 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 CLDN16Q9Y5I7 305 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 MAD1L1Q9Y6D9 718 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 COMMD10Q9Y6G5 202 aa6.73□□□□□ -1.33
VPS4A-203ENST00000564399 PRR14LQ5THK1 2151 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ALPK2Q86TB3 2170 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 A0A088AWK7 358 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 CTAGE15A4D2H0 777 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SYNDIG1LA6NDD5 238 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 LRRC3CA6NJW4 275 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 CD8B2A6NJW9 211 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ERI3O43414 337 aaKnown RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 CTNSO60931 367 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 LRATO95237 230 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ACSL3O95573 720 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 GUCA1CO95843 209 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 IL18BPO95998 194 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 TMIGD3P0DMS9 266 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 NID1P14543 1247 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF10P21506 573 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 RPL21P46778 160 aaKnown RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 REEP5Q00765 189 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 DHX9Q08211 1270 aaKnown RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 RCAN2Q14206 197 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 RCN2Q14257 317 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 TOMM20Q15388 145 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ACKR1Q16570 336 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 MPEG1Q2M385 716 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF791Q3KP31 576 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 PIGGQ5H8A4 983 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SEL1L2Q5TEA6 688 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SYDE1Q6ZW31 735 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 GSTA5Q7RTV2 222 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 TMPRSS11BQ86T26 416 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 CTAGE6Q86UF2 777 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SYCE1Q8N0S2 351 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 OR56A3Q8NH54 315 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SLC2A12Q8TD20 617 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 PAQR8Q8TEZ7 354 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 ATL1Q8WXF7 558 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 GAL3ST3Q96A11 431 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SPACA9Q96E40 222 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 PIK3IP1Q96FE7 263 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 DOHHQ9BU89 302 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 NPLQ9BXD5 320 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 AICDAQ9GZX7 198 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 LACRTQ9GZZ8 138 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 PELI2Q9HAT8 420 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 CNIH4Q9P003 139 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 JKAMPQ9P055 326 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 VTI1BQ9UEU0 232 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 SLC6A5Q9Y345 797 aa6.72□□□□□ -1.33
VPS4A-203ENST00000564399 EPN1Q9Y6I3 576 aaPredicted RBP6.72□□□□□ -1.33
VPS4A-203ENST00000564399 MBD3L3A6NE82 208 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms