RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 POGLUT1Q8NBL1 392 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 UHMK1Q8TAS1 419 aaKnown RBP15.69■□□□□ 0.1
CLK3-210ENST00000563112 ISL2Q96A47 359 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 MAGED4Q96JG8 741 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 GPR137Q96N19 417 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 FRMD6Q96NE9 622 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 ZNF358Q9NW07 568 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 PHF11Q9UIL8 331 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 NPIPA1Q9UND3 350 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 ERVK-11Q9UQG0 969 aa15.69■□□□□ 0.1
CLK3-210ENST00000563112 MYOCOSA0A1B0GUC4 107 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 C17orf105B2RV13 164 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 TRIM49D1C9J1S8 452 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 DYRK3O43781 588 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 ZNF24P17028 368 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 ECHS1P30084 290 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 MAGEA12P43365 314 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 CCNG1P51959 295 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 GPR180Q86V85 440 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 GPALPP1Q8IXQ4 340 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 ZCCHC7Q8N3Z6 543 aaKnown RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 RNF175Q8N4F7 328 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 L3MBTL4Q8NA19 623 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 PTPMT1Q8WUK0 201 aaPredicted RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 TANKQ92844 425 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 PHF21BQ96EK2 531 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 SORBS1Q9BX66 1292 aaKnown RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 OR8D2Q9GZM6 311 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 TSPAN10Q9H1Z9 355 aaPredicted RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 RPF2Q9H7B2 306 aaKnown RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 NOL11Q9H8H0 719 aaKnown RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 TIMMDC1Q9NPL8 285 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 PSD3Q9NYI0 1048 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 COPS7AQ9UBW8 275 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 ZNF223Q9UK11 482 aaPredicted RBP15.68■□□□□ 0.1
CLK3-210ENST00000563112 RNF11Q9Y3C5 154 aa15.68■□□□□ 0.1
CLK3-210ENST00000563112 EXOC1LA0A1B0GW35 172 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 A8MVJ9 347 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 STX16-NPEPL1H3BU86 382 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 FOXE1O00358 373 aaPredicted RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 STX16O14662 325 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ASNA1O43681 348 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 SLC19A2O60779 497 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 SNRPAP09012 282 aaKnown RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 COL8A1P27658 744 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 BUD31P41223 144 aaPredicted RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 CA7P43166 264 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ID2Q02363 134 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 CUL3Q13618 768 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 CYP20A1Q6UW02 462 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ZNF227Q86WZ6 799 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 GHDCQ8N2G8 530 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 CPSF7Q8N684 471 aaKnown RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 OR5L2Q8NGL0 311 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 DCAKDQ8WVC6 231 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ASB15Q8WXK1 588 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ANKRD9Q96BM1 317 aaPredicted RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 RBM18Q96H35 190 aaKnown RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 DGAT2Q96PD7 388 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 MRPL57Q9BQC6 102 aaKnown RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 HPF1Q9NWY4 346 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 LYARQ9NX58 379 aaKnown RBP15.67■□□□□ 0.1
CLK3-210ENST00000563112 MYOTQ9UBF9 498 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 XPR1Q9UBH6 696 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 SH3BGRL2Q9UJC5 107 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 NFU1Q9UMS0 254 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 ITPR2Q14571 2701 aa15.67■□□□□ 0.1
CLK3-210ENST00000563112 NBPF19A0A087WUL8 3843 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 PLPP1O14494 284 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 PEX1O43933 1283 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 PRKNO60260 465 aaPredicted RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 OR2J2O76002 312 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 ESRRAP11474 423 aaPredicted RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 STT3AP46977 705 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 MEOX1P50221 254 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 TTC19Q6DKK2 380 aaPredicted RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 TRMT10CQ7L0Y3 403 aaKnown RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 NUDT13Q86X67 352 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 SPPL2CQ8IUH8 684 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 SULF2Q8IWU5 870 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 OR4N5Q8IXE1 308 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 OR8K3Q8NH51 312 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 WDR20Q8TBZ3 569 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 SLC2A12Q8TD20 617 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 TRIM44Q96DX7 344 aaPredicted RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 ART5Q96L15 291 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 SERPINI1Q99574 410 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 NTMT1Q9BV86 223 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 MRPL46Q9H2W6 279 aaKnown RBP15.66■□□□□ 0.1
CLK3-210ENST00000563112 WDR41Q9HAD4 459 aa15.66■□□□□ 0.1
CLK3-210ENST00000563112 CROCCQ5TZA2 2017 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 WWP2O00308 870 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 OR7A17O14581 309 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 TFECO14948 347 aaPredicted RBP15.65■□□□□ 0.1
CLK3-210ENST00000563112 FGF17O60258 216 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 WISP2O76076 250 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 ABHD2P08910 425 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 ABOP16442 354 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 DCTP40126 519 aa15.65■□□□□ 0.1
CLK3-210ENST00000563112 NEK2P51955 445 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms