RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 RECQLP46063 649 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 HTRA3P83110 453 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF45Q02386 682 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SYCE2Q6PIF2 218 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF438Q7Z4V0 828 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 TMPRSS11BQ86T26 416 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 NPAS3Q8IXF0 933 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 MMP21Q8N119 569 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 KIAA1958Q8N8K9 716 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 KBTBD8Q8NFY9 601 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 IPCEF1Q8WWN9 437 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 TRIM43Q96BQ3 446 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 GFM1Q96RP9 751 aaKnown RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SMAD5Q99717 465 aaKnown RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 BRF2Q9HAW0 419 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 RPRD1BQ9NQG5 326 aaKnown RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 NDUFAF4Q9P032 175 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 PCYT1BQ9Y5K3 369 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 PLK4O00444 970 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 GGT2P36268 569 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 MMP12P39900 470 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 HNF4AP41235 474 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 GALK2Q01415 458 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 PCDH1Q08174 1060 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SSX1Q16384 188 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 NDUFA5Q16718 116 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 LIPKQ5VXJ0 399 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 ERICH5Q6P6B1 374 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 CCDC149Q6ZUS6 474 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 PTCHD4Q6ZW05 846 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 DPPA4Q7L190 304 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 PARS2Q7L3T8 475 aaKnown RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 CAMKMTQ7Z624 323 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 C12orf40Q86WS4 652 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 KLHDC8AQ8IYD2 350 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 WDR48Q8TAF3 677 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 AP2M1Q96CW1 435 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SIGLEC11Q96RL6 698 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 GPBP1L1Q9HC44 474 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 CTPS2Q9NRF8 586 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 IL36AQ9UHA7 158 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 BTNL2Q9UIR0 455 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 CLCA3PQ9Y6N3 262 aa11.99□□□□□ -0.49
SFSWAP-208ENST00000539506 SZT2Q5T011 3432 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 MYO10Q9HD67 2058 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 GNG14A0A1W2PPG7 69 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 OR6C70A6NIJ9 312 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 LILRB5O75023 590 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ATG13O75143 517 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 C1orf105O95561 183 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 POLR2EP19388 210 aaKnown RBP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 CNR2P34972 360 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 TBPL1P62380 186 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 RPS26P62854 115 aaKnown RBP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 GPLD1P80108 840 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 E2F2Q14209 437 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF77Q15935 545 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF805Q5CZA5 627 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF544Q6NX49 715 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 FAM131AQ6UXB0 335 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 OLIG3Q7RTU3 272 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF740Q8NDX6 193 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ST13P5Q8NFI4 369 aaPredicted RBP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 OR4A15Q8NGL6 344 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 VPS35Q96QK1 796 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 MOV10Q9HCE1 1003 aaKnown RBP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 RAB23Q9ULC3 237 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 PEX16Q9Y5Y5 336 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 PLD2O14939 933 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 TGFB1P01137 390 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 RHOP08100 348 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 CBLP22681 906 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 TIA1P31483 386 aaKnown RBP eCLIP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 VEGFBP49765 207 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 PTGES3Q15185 160 aaKnown RBP11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 RAB43Q86YS6 212 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ZFP41Q8N8Y5 198 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 NFKBIDQ8NI38 313 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 OR51B5Q9H339 312 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 TOR4AQ9NXH8 423 aa11.98□□□□□ -0.49
SFSWAP-208ENST00000539506 ANTXRLA6NF34 631 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 C6orf47O95873 294 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 HOXB6P17509 224 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 PPM1AP35813 382 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 HTR2BP41595 481 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 ALDH6A1Q02252 535 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 ZNF33BQ06732 778 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 TCEAL5Q5H9L2 206 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 CEP78Q5JTW2 689 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 COMMD6Q7Z4G1 85 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 SPRED2Q7Z698 418 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 CFAP206Q8IYR0 622 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 C2orf73Q8N5S3 287 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 MAGEB10Q96LZ2 347 aaPredicted RBP11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 PITX2Q99697 317 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 ERVH48-1M5A8F1 160 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 TNFRSF21O75509 655 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 CATP04040 527 aaKnown RBP11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 ADH1AP07327 375 aa11.97□□□□□ -0.49
SFSWAP-208ENST00000539506 ELFN1P0C7U0 828 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms