RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FTSJ1Q9UET6 329 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 PRKAB1Q9Y478 270 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 KLK4Q9Y5K2 254 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 METTL15A6NJ78 407 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 CACNB4O00305 520 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 TBX6O95947 436 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 ADAP00813 363 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 RGS6P49758 472 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 CNTN1Q12860 1018 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 PUM1Q14671 1186 aaKnown RBP eCLIP20.21■□□□□ 0.83
VPS28-205ENST00000526204 ARMCX4Q5H9R4 360 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 TOR1AIP1Q5JTV8 583 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 ZNF770Q6IQ21 691 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 ZNF367Q7RTV3 350 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 LRRTM4Q86VH4 590 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 B3GNT7Q8NFL0 401 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 RSPRY1Q96DX4 576 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 ZNF764Q96H86 408 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 F2RL3Q96RI0 385 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 HDAC8Q9BY41 377 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 TMEM245Q9H330 911 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 TMCC3Q9ULS5 477 aa20.21■□□□□ 0.83
VPS28-205ENST00000526204 DNMT3AQ9Y6K1 912 aaPredicted RBP20.21■□□□□ 0.83
VPS28-205ENST00000526204 SAGE2PA6NJ88 616 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 C1QTNF3-AMACRE9PGA6 284 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 BCHEP06276 602 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 CHMP24386 653 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 ZNF234Q14588 700 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 PTCHD4Q6ZW05 846 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 ANKRD53Q8N9V6 530 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 RASSF5Q8WWW0 418 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 SLAMF7Q9NQ25 335 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 CCDC59Q9P031 241 aaKnown RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 ISPDA4D126 451 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 ZSCAN9O15535 394 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 SH3BP5O60239 455 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 MFN2O95140 757 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 OXSR1O95747 527 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 PTHP01270 115 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 VIPR2P41587 438 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 FRKP42685 505 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 ALDH9A1P49189 494 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 PCBP4P57723 403 aaKnown RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 METRNLQ641Q3 311 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 TNFAIP8L2Q6P589 184 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 LACC1Q8IV20 430 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 PLA2G15Q8NCC3 412 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 FAM46DQ8NEK8 389 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 SMPDL3AQ92484 453 aa20.2■□□□□ 0.82
VPS28-205ENST00000526204 ZBED6CLQ96FA7 236 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 NXF2Q9GZY0 626 aaKnown RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 PCYT1BQ9Y5K3 369 aaPredicted RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 CFAP20Q9Y6A4 193 aaKnown RBP20.2■□□□□ 0.82
VPS28-205ENST00000526204 TLL1O43897 1013 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 P2RY2P41231 377 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 CYP4F2P78329 520 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 REEP5Q00765 189 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 SPDYE7PQ495Y7 208 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 PNCKQ6P2M8 343 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 C6orf120Q7Z4R8 191 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 HEATR4Q86WZ0 1026 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 MMAAQ8IVH4 418 aaKnown RBP20.19■□□□□ 0.82
VPS28-205ENST00000526204 TMEM19Q96HH6 336 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 RHCGQ9UBD6 479 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 SLC23A2Q9UGH3 650 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 ADAM29Q9UKF5 820 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 MGAT4BQ9UQ53 548 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 PCDHGA3Q9Y5H0 932 aa20.19■□□□□ 0.82
VPS28-205ENST00000526204 DSPPQ9NZW4 1301 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 HEPACAM2A8MVW5 462 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 RTCAO00442 366 aaKnown RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 FFAR1O14842 300 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 EIF2DP41214 584 aaKnown RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 LIM2P55344 173 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 TIMM50Q3ZCQ8 353 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 FAM180BQ6P0A1 224 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 NUDT13Q86X67 352 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 SNX29P2Q8IUI4 249 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 RGMAQ96B86 450 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 ZNF607Q96SK3 696 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 CXXC1Q9P0U4 656 aaPredicted RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 IFT52Q9Y366 437 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 AGAP5A6NIR3 686 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 PIPP12273 146 aaPredicted RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 CNR2P34972 360 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 LIMK1P53667 647 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 SMIM11AP58511 58 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 RPS26P62854 115 aaKnown RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 SFSWAPQ12872 951 aaKnown RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 GAB4Q2WGN9 574 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 RPS26P11Q5JNZ5 115 aaPredicted RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 SUSD6Q92537 303 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 UCK2Q9BZX2 261 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 ACSS1Q9NUB1 689 aaPredicted RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 CUEDC1Q9NWM3 386 aaPredicted RBP20.18■□□□□ 0.82
VPS28-205ENST00000526204 RWDD3Q9Y3V2 267 aa20.18■□□□□ 0.82
VPS28-205ENST00000526204 ZW10O43264 779 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 DBTP11182 482 aaKnown RBP20.17■□□□□ 0.82
VPS28-205ENST00000526204 OSMP13725 252 aa20.17■□□□□ 0.82
VPS28-205ENST00000526204 HSPB3Q12988 150 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms