RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SPASTQ9UBP0 616 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NDUFAF1Q9Y375 327 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 HS3ST3A1Q9Y663 406 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 MUC22E2RYF6 1773 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ATP6V1G2-DDX39BF2Z307 99 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ACOT8O14734 319 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 C9P02748 559 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 GSTM1P09488 218 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SP9P0CG40 484 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 PSKH1P11801 424 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 IMPA1P29218 277 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CD40LGP29965 261 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CASP3P42574 277 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 YPEL5P62699 121 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ILF2Q12905 390 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 GPR18Q14330 331 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ELOCQ15369 112 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SF3A2Q15428 464 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 BCL7AQ4VC05 210 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 PAMR1Q6UXH9 720 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 FAM92BQ6ZTR7 304 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ABI3BPQ7Z7G0 1075 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 GALNT7Q86SF2 657 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SYVN1Q86TM6 617 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CENPNQ96H22 339 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NSMCE2Q96MF7 247 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC12A9Q9BXP2 914 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 COL25A1Q9BXS0 654 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 HOXD1Q9GZZ0 328 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 OR52A5Q9H2C5 316 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SP140LQ9H930 580 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CUEDC1Q9NWM3 386 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 HRASLS2Q9NWW9 162 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SOHLH2Q9NX45 425 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SPHK1Q9NYA1 384 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ERVK-18Q9QC07 812 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ACSL5Q9ULC5 683 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 KCNE2Q9Y6J6 123 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 COLEC10Q9Y6Z7 277 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NINQ8N4C6 2090 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 UBFD1O14562 309 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 AZIN1O14977 448 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 PIP5K1BO14986 540 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ARPC2O15144 300 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ZW10O43264 779 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 MED26O95402 600 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CLEC2LP0C7M8 214 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CBSLP0DN79 551 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 F3P13726 295 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CD36P16671 472 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CBSP35520 551 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 PNLIPRP1P54315 467 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 PPP1CAP62136 330 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CHRNB3Q05901 458 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ATAD3CQ5T2N8 411 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 LETMD1Q6P1Q0 360 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 KLHL17Q6TDP4 642 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 THAP5Q7Z6K1 395 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NLRP8Q86W28 1048 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 TMEM151AQ8N4L1 468 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 NEIL2Q969S2 332 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 ISL2Q96A47 359 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CD244Q9BZW8 370 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 UCK2Q9BZX2 261 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 DCSTAMPQ9H295 470 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 GSTO2Q9H4Y5 243 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 CPNE7Q9UBL6 633 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 SH2B3Q9UQQ2 575 aa8.28□□□□□ -1.08
LIMCH1-209ENST00000509277 FANCMQ8IYD8 2048 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF682O95780 498 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 TGFB1P01137 390 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 CCNYL3P0C7X3 344 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 DCKP27707 260 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 IDH2P48735 452 aaKnown RBP8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 KIAA1024LP59773 190 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 SPEM2Q0P670 501 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 BNIP2Q12982 314 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 GRIK2Q13002 908 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 LCP2Q13094 533 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 PRAMEF13Q5VWM6 474 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 NXNL2Q5VZ03 156 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 C17orf64Q86WR6 236 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC44A2Q8IWA5 706 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 MAML2Q8IZL2 1156 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 RHEBL1Q8TAI7 183 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 ADAMTS16Q8TE57 1224 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 RIT1Q92963 219 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 Q96MT0 163 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 TGM7Q96PF1 710 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 PHOX2BQ99453 314 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 BDH2Q9BUT1 245 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 KIF17Q9P2E2 1029 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF624Q9P2J8 865 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 NFKBIL1Q9UBC1 381 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 PCTPQ9UKL6 214 aa8.27□□□□□ -1.08
LIMCH1-209ENST00000509277 EFCAB9A8MZ26 197 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 OR1F1O43749 312 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 LRATO95237 230 aa8.27□□□□□ -1.09
LIMCH1-209ENST00000509277 ANGPTL1O95841 491 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms