RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MS4A18Q3C1V0 323 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 C14orf177Q52M58 125 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 MPPE1Q53F39 396 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TAF1BQ53T94 588 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 PRAMEF7Q5VXH5 474 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 RAB12Q6IQ22 244 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TATDN1Q6P1N9 297 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TBC1D10CQ8IV04 446 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR8H1Q8NGG4 311 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR6F1Q8NGZ6 308 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 EXOC6Q8TAG9 804 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 SPPL2AQ8TCT8 520 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TCP11Q8WWU5 503 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 PRICKLE1Q96MT3 831 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 RUFY1Q96T51 708 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 SPXQ9BT56 116 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 DDX47Q9H0S4 455 aaKnown RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 ABCG4Q9H172 646 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TRPV6Q9H1D0 765 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 ABCG8Q9H221 673 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC26A1Q9H2B4 701 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 NMUR1Q9HB89 426 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 MRTO4Q9UKD2 239 aaKnown RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 MRPS2Q9Y399 296 aaKnown RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 ARID2Q68CP9 1835 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR5H15A6NDH6 313 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCDC69A6NI79 296 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 ASB14A6NK59 587 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 YJEFN3A6XGL0 299 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 TMCO5BA8MYB1 307 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 EEF2KO00418 725 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SOCS3O14543 225 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CSO75390 466 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CSDE1O75534 798 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SERPINF2P08697 491 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 ADORA3P0DMS8 318 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SELEP16581 610 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 AHCYP23526 432 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZFP36L2P47974 494 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC12A3P55017 1021 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SRP54P61011 504 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCZ1BP86790 482 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCZ1P86791 482 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 WASHC5Q12768 1159 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 RIGQ13278 110 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 MSLNQ13421 630 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 TRADDQ15628 312 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 KNOP1Q1ED39 458 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 WSCD2Q2TBF2 565 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 C2CD6Q53TS8 623 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 C1orf189Q5VU69 101 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 DLEU7Q6UYE1 221 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF730Q6ZMV8 503 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 MIER3Q7Z3K6 550 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 BATF2Q8N1L9 274 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 Q8NBF4 154 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CCNYQ8ND76 341 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 PRSS33Q8NF86 280 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR6M1Q8NGM8 313 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 PCNPQ8WW12 178 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 C11orf52Q96A22 123 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 MRPL53Q96EL3 112 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC45A3Q96JT2 553 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 C18orf12Q96KH6 178 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 RPGRIP1Q96KN7 1286 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 GPR137Q96N19 417 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 TMEM237Q96Q45 408 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 RAB40CQ96S21 281 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 IWS1Q96ST2 819 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SPAG8Q99932 426 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 FUNDC2Q9BWH2 189 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 CARD9Q9H257 536 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 TNMDQ9H2S6 317 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 GDF3Q9NR23 364 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 TECRQ9NZ01 308 aaKnown RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 VPS54Q9P1Q0 977 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 THAP10Q9P2Z0 257 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 RPH3AQ9Y2J0 694 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 RNF215Q9Y6U7 377 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 FGD5Q6ZNL6 1462 aa3.38□□□□□ -1.87
HMGB1P28-201ENST00000507778 SH3PXD2BA1X283 911 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NEDD8-MDP1E9PL57 170 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC4A1P02730 911 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 PCP11498 1178 aaKnown RBP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 CD1DP15813 335 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 FCARP24071 287 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 MARCKSP29966 332 aaPredicted RBP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 PPP2R1AP30153 589 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 PITPNBP48739 271 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 FKBP3Q00688 224 aaKnown RBP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 ELAVL2Q12926 359 aaKnown RBP3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 LY6DQ14210 128 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF146Q15072 292 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 ECSCRQ19T08 205 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 EPC2Q52LR7 807 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NKAIN2Q5VXU1 208 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 RTL6Q6ICC9 239 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 NEPROQ6NW34 567 aa3.37□□□□□ -1.87
HMGB1P28-201ENST00000507778 GSG1LQ6UXU4 331 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms