RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 GTF2IRD2BQ6EKJ0 949 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3CQ6IPX1 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 REEP3Q6NUK4 255 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 GTF2IRD2Q86UP8 949 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 RNF130Q86XS8 419 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3Q8IZP1 549 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 OR2L5Q8NG80 312 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 OR2L3Q8NG85 312 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 OR13F1Q8NGS4 319 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 MIPOL1Q8TD10 442 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SFXN5Q8TD22 340 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 GEMIN6Q8WXD5 167 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 MOAP1Q96BY2 351 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 MS4A6EQ96DS6 147 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 THAP11Q96EK4 314 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 MRGPRX1Q96LB2 322 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 BMFQ96LC9 184 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 WDR92Q96MX6 357 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TEFMQ96QE5 360 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 ZNF300Q96RE9 604 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 BCL7BQ9BQE9 202 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 FAIM2Q9BWQ8 316 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 AICDAQ9GZX7 198 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 ING2Q9H160 280 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 MRPS30Q9NP92 439 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 TIMMDC1Q9NPL8 285 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SLAMF7Q9NQ25 335 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PRDM7Q9NQW5 492 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SIRT3Q9NTG7 399 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 DNAAF2Q9NVR5 837 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 KCND3Q9UK17 655 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SIT1Q9Y3P8 196 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 ASB4Q9Y574 426 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PCDHGA4Q9Y5G9 962 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 LYVE1Q9Y5Y7 322 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 CFAP20Q9Y6A4 193 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 FEZF1A0PJY2 475 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 KRBA1A5PL33 1030 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 FAM221BA6H8Z2 402 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 MYO1GB0I1T2 1018 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 MAN2B1O00754 1011 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 BCKDKO14874 412 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SEC24DO94855 1032 aaPredicted RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 GBAP04062 536 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 NTRK1P04629 796 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 ANXA8P13928 327 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 ITIH1P19827 911 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PRKACGP22612 351 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 HNRNPA2B1P22626 353 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 ACVR2AP27037 513 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PSMB5P28074 263 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 CMPK1P30085 196 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PEBP1P30086 187 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 CHI3L1P36222 383 aaPredicted RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 NUDT1P36639 197 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 BCL6P41182 706 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 CLK3P49761 638 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 CCR5P51681 352 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 TMBIM6P55061 237 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SEC13P55735 322 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 NUP107P57740 925 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PPP2CBP62714 309 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PPP2CAP67775 309 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 KCNC4Q03721 635 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 CTU2Q2VPK5 515 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 KIAA1614Q5VZ46 1190 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 XAF1Q6GPH4 301 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 DUS1LQ6P1R4 473 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 ABHD17CQ6PCB6 329 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 KCTD8Q6ZWB6 473 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PAQR7Q86WK9 346 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SPARTQ8N0X7 666 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PARP8Q8N3A8 854 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 C2orf73Q8N5S3 287 aaPredicted RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 FLVCR1-AS1Q8TAF5 88 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 NT5CQ8TCD5 201 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 RASSF5Q8WWW0 418 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 OR1E3Q8WZA6 343 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 MAL2Q969L2 176 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SLC22A18Q96BI1 424 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 NMD3Q96D46 503 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 HRASLS5Q96KN8 279 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 DHRS1Q96LJ7 313 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 KCNC2Q96PR1 638 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 APOL4Q9BPW4 351 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SORBS1Q9BX66 1292 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 POLR1BQ9H9Y6 1135 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 CXorf21Q9HAI6 301 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 BCL2L10Q9HD36 194 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 SLC6A20Q9NP91 592 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 IMP3Q9NV31 184 aaKnown RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 PDP1Q9P0J1 537 aaPredicted RBP10.19□□□□□ -0.78
USP4-214ENST00000491791 CES1P1Q9UKY3 287 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 KCNK6Q9Y257 313 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 PLEKHM1Q9Y4G2 1056 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 DGKBQ9Y6T7 804 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 ENPP4Q9Y6X5 453 aa10.19□□□□□ -0.78
USP4-214ENST00000491791 POM121BA6NF01 834 aa10.18□□□□□ -0.78
USP4-214ENST00000491791 PRAMEF25A6NGN4 478 aa10.18□□□□□ -0.78
USP4-214ENST00000491791 LRRC72A6NJI9 287 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms