RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 AP4B1Q9Y6B7 739 aa18.34■□□□□ 0.53
CCM2-216ENST00000488727 SEC16AO15027 2179 aa18.33■□□□□ 0.53
CCM2-216ENST00000488727 HYKKA2RU49 373 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 ANKDD1BA6NHY2 528 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 ARPC2O15144 300 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 CPNE3O75131 537 aaKnown RBP18.33■□□□□ 0.52
CCM2-216ENST00000488727 DLGAP3O95886 979 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 ZCCHC18P0CG32 403 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 PCNAP12004 261 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 PWP1Q13610 501 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 TBC1D25Q3MII6 688 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 HMBOX1Q6NT76 420 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 TTC29Q8NA56 475 aaPredicted RBP18.33■□□□□ 0.52
CCM2-216ENST00000488727 TRPV3Q8NET8 790 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 HUS1BQ8NHY5 278 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 NT5CQ8TCD5 201 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 UBE2E3Q969T4 207 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 EME1Q96AY2 570 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 NDC1Q9BTX1 674 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 ALG2Q9H553 416 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 CUTCQ9NTM9 273 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 TSC22D4Q9Y3Q8 395 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 POLR3HQ9Y535 204 aaPredicted RBP18.33■□□□□ 0.52
CCM2-216ENST00000488727 AHCTF1Q8WYP5 2266 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 SCN3AQ9NY46 2000 aa18.33■□□□□ 0.52
CCM2-216ENST00000488727 DHRS12A0PJE2 317 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 HNRNPRO43390 633 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 CLEC3AO75596 197 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 GPIP06744 558 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 G6PDP11413 515 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 BMP2P12643 396 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 GSTM2P28161 218 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 NEK2P51955 445 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 KIAA0040Q15053 153 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 RHBDD2Q6NTF9 364 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 TMEM214Q6NUQ4 689 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 TTLL10Q6ZVT0 673 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 TIPARPQ7Z3E1 657 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 CANT1Q8WVQ1 401 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 CLIP3Q96DZ5 547 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 ZNF597Q96LX8 424 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 ZNF578Q96N58 590 aaPredicted RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 MTERF1Q99551 399 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 NLNQ9BYT8 704 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 SLC6A16Q9GZN6 736 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 ACSL6Q9UKU0 697 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 SRPK3Q9UPE1 567 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 SNX13Q9Y5W8 968 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 CELSR3Q9NYQ7 3312 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 C4orf51C9J302 202 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 MANBAO00462 879 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 HTR1EP28566 365 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 RORAP35398 523 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 EMP3P54852 163 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 LIPEQ05469 1076 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 DDX39BQ13838 428 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 RFTN2Q52LD8 501 aaPredicted RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 FRG2Q64ET8 278 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 GALNT6Q8NCL4 622 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 ZCCHC10Q8TBK6 192 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 MTFMTQ96DP5 389 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 MAGEB10Q96LZ2 347 aaPredicted RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 FRG2BQ96QU4 278 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 KCTD14Q9BQ13 255 aaPredicted RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 KLHL31Q9H511 634 aa18.32■□□□□ 0.52
CCM2-216ENST00000488727 AKIRIN1Q9H9L7 192 aaPredicted RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 FARSBQ9NSD9 589 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 EIF3LQ9Y262 564 aaKnown RBP18.32■□□□□ 0.52
CCM2-216ENST00000488727 ARSFP54793 590 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 RGS1Q08116 209 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 FAM214AQ32MH5 1076 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 MTX3Q5HYI7 312 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 RABL3Q5HYI8 236 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 MANEAQ5SRI9 462 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 C1orf189Q5VU69 101 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 ZNF385CQ66K41 422 aaPredicted RBP18.31■□□□□ 0.52
CCM2-216ENST00000488727 NANOGP8Q6NSW7 305 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 ADGRG5Q8IZF4 528 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 GLB1L3Q8NCI6 653 aaPredicted RBP18.31■□□□□ 0.52
CCM2-216ENST00000488727 DNAJB14Q8TBM8 379 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 REPS1Q96D71 796 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 MS4A8Q9BY19 250 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 SLC7A5P2Q9GIP4 190 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 NANOGQ9H9S0 305 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 DMRT3Q9NQL9 472 aa18.31■□□□□ 0.52
CCM2-216ENST00000488727 TCRBV5S2A0A599 114 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 LRIT2A6NDA9 550 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 MAGEB17A8MXT2 336 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.3■□□□□ 0.52
CCM2-216ENST00000488727 STMND1H3BQB6 276 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 FOXS1O43638 330 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 ULK1O75385 1050 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 UMPSP11172 480 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 IL10P22301 178 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 PSMA4P25789 261 aaKnown RBP18.3■□□□□ 0.52
CCM2-216ENST00000488727 CD82P27701 267 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 PIK3CBP42338 1070 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 RPL38P63173 70 aaKnown RBP18.3■□□□□ 0.52
CCM2-216ENST00000488727 ADPRMQ3LIE5 342 aa18.3■□□□□ 0.52
CCM2-216ENST00000488727 TOR1AIP1Q5JTV8 583 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms