RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 UTS2RQ9UKP6 389 aa17.03■□□□□ 0.32
SDC1-203ENST00000403076 CCDC154A6NI56 674 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 WASHC1A8K0Z3 465 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 C9J4A7 227 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 EBAG9O00559 213 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 NVLO15381 856 aaKnown RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 CDC123O75794 336 aaPredicted RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 IL6P05231 212 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SNRPB2P08579 225 aaKnown RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 LAMP1P11279 417 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 COX4I1P13073 169 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 IL10P22301 178 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SLC5A2P31639 672 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 CYLC2Q14093 348 aaPredicted RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 VPS26BQ4G0F5 336 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 TIGD2Q4W5G0 525 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 VWA2Q5GFL6 755 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 OR4F3Q6IEY1 312 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SLC48A1Q6P1K1 146 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 FAM199XQ6PEV8 388 aaPredicted RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 COX15Q7KZN9 410 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 OVCH1Q7RTY7 1134 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 ZNF595Q8IYB9 648 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 PRSS58Q8IYP2 241 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 POU5F2Q8N7G0 328 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 TANKQ92844 425 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 VPS33AQ96AX1 596 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 CMTM5Q96DZ9 223 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SPDL1Q96EA4 605 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SLC46A1Q96NT5 459 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 OR1F2PQ96R84 312 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 OR52E6Q96RD3 313 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SLC25A23Q9BV35 468 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 DUSP26Q9BV47 211 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 B3GNT4Q9C0J1 378 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 CHST8Q9H2A9 424 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 AKIRIN1Q9H9L7 192 aaPredicted RBP17.02■□□□□ 0.32
SDC1-203ENST00000403076 PRTFDC1Q9NRG1 225 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 SLC22A11Q9NSA0 550 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 PADI1Q9ULC6 663 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 AK5Q9Y6K8 562 aa17.02■□□□□ 0.32
SDC1-203ENST00000403076 PTPRBP23467 1997 aa17.02■□□□□ 0.31
SDC1-203ENST00000403076 BLACEA4D250 179 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 CAPN14A8MX76 684 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ANGPT2O15123 496 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 CFLARO15519 480 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 TBX19O60806 448 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 JRKO75564 520 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 PGRP06401 933 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 CD1EP15812 388 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 HNRNPFP52597 415 aaKnown RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 SLC13A2Q13183 592 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 PDE7AQ13946 482 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 RCAN2Q14206 197 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 MMEL1Q495T6 779 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 MINDY4Q4G0A6 757 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ZNF385BQ569K4 471 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 FAM91A1Q658Y4 838 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 LCN10Q6JVE6 187 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 OR4N5Q8IXE1 308 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 TMEM52Q8NDY8 209 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 OR4K14Q8NGD5 310 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 RP9Q8TA86 221 aaKnown RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 MIEF2Q96C03 454 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 BBS4Q96RK4 519 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 CTSFQ9UBX1 484 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ENTPD4Q9Y227 616 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ZNF780BQ9Y6R6 833 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 DYTNA2CJ06 578 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 RRP9O43818 475 aaKnown RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 LDB3O75112 727 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 BMP10O95393 424 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 DLGAP3O95886 979 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ONECUT2O95948 504 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 C8orf89P0DMQ9 161 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 PPP2R1BP30154 601 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ZFP36L2P47974 494 aaKnown RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 ID2Q02363 134 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 STX5Q13190 355 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 KRT72Q14CN4 511 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ANXA8L1Q5VT79 327 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 FAM180BQ6P0A1 224 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ZC3H7AQ8IWR0 971 aaKnown RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 VPS37AQ8NEZ2 397 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 OR8J2Q8NGG1 315 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 DNAJB14Q8TBM8 379 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 STT3BQ8TCJ2 826 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 COQ8BQ96D53 544 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 BHLHE41Q9C0J9 482 aaPredicted RBP17.01■□□□□ 0.31
SDC1-203ENST00000403076 NRSN2Q9GZP1 204 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 SLC35C2Q9NQQ7 365 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 PRDM9Q9NQV7 894 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 ARL8BQ9NVJ2 186 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 TAS2R7Q9NYW3 318 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 CES1P1Q9UKY3 287 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 NDUFAF1Q9Y375 327 aa17.01■□□□□ 0.31
SDC1-203ENST00000403076 SPEGQ15772 3267 aa17■□□□□ 0.31
SDC1-203ENST00000403076 PDPK1O15530 556 aa17■□□□□ 0.31
SDC1-203ENST00000403076 CTNSO60931 367 aa17■□□□□ 0.31
SDC1-203ENST00000403076 UBOX5O94941 541 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms