RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SMIM30A4D0T7 59 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 ASPDHA6ND91 283 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 CCSMST1Q4G0I0 132 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 RPS26P11Q5JNZ5 115 aaPredicted RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 ANKRD34AQ69YU3 496 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 ZNF367Q7RTV3 350 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 TRIM73Q86UV7 250 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 LINC00471Q8N535 108 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 TBC1D15Q8TC07 691 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 GPR151Q8TDV0 419 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 OCEL1Q9H607 264 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 LTB4R2Q9NPC1 389 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 SOHLH2Q9NX45 425 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 PPT2Q9UMR5 302 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 GPC6Q9Y625 555 aaPredicted RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 CPSF4LA6NMK7 179 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 H0YIV9 168 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 FAAHO00519 579 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 B3GALT2O43825 422 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 C1orf105O95561 183 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 C21orf33P30042 268 aaPredicted RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 NRIP1P48552 1158 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 ANKDD1AQ495B1 522 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 CXXC5Q7LFL8 322 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 DENND6BQ8NEG7 585 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 FLCNQ8NFG4 579 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 OR56A1Q8NGH5 318 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 RAB7BQ96AH8 199 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 SLC30A2Q9BRI3 323 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 DSN1Q9H410 356 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 MKLN1Q9UL63 735 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 HEBP2Q9Y5Z4 205 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 A0A1W2PP55 124 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 PLOD3O60568 738 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 IFNGP01579 166 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 BMPR1AP36894 532 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 CXCR4P61073 352 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 EIF4EBP2Q13542 120 aaPredicted RBP17.71■□□□□ 0.42
USP48-204ENST00000400301 UNC5DQ6UXZ4 953 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 CYHR1Q6ZMK1 362 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 CADM2Q8N3J6 435 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 SH3YL1Q96HL8 342 aaPredicted RBP17.71■□□□□ 0.42
USP48-204ENST00000400301 OR51I1Q9H343 314 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 GPN2Q9H9Y4 310 aaPredicted RBP17.71■□□□□ 0.42
USP48-204ENST00000400301 SNX7Q9UNH6 387 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 MED16Q9Y2X0 877 aa17.71■□□□□ 0.42
USP48-204ENST00000400301 FUOMA2VDF0 154 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 MLLT1Q03111 559 aaPredicted RBP17.7■□□□□ 0.42
USP48-204ENST00000400301 ST3GAL3Q11203 375 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 SLC5A12Q1EHB4 618 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 LHX8Q68G74 356 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 CCSAPQ6IQ19 270 aaPredicted RBP17.7■□□□□ 0.42
USP48-204ENST00000400301 KRT74Q7RTS7 529 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ANKRD13BQ86YJ7 626 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ZBTB8BQ8NAP8 495 aaPredicted RBP17.7■□□□□ 0.42
USP48-204ENST00000400301 OR10H4Q8NGA5 316 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 TP53INP1Q96A56 240 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 AMBRA1Q9C0C7 1298 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ZSCAN32Q9NX65 697 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ASIC5Q9NY37 505 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 CLEC4AQ9UMR7 237 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 PGRMC2O15173 223 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 LATO43561 262 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 PFN3P60673 137 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 HLA-DQA1Q5Y7H0 255 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 OR8J1Q8NGP2 316 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ZFP90Q8TF47 636 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 ECHDC3Q96DC8 303 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 TBX5Q99593 518 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 MRPS33Q9Y291 106 aaKnown RBP17.7■□□□□ 0.42
USP48-204ENST00000400301 HEPACAM2A8MVW5 462 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 KIAA0513O60268 411 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 PTNP21246 168 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 OR2B6P58173 313 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 DMPKQ09013 629 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 SLC13A2Q13183 592 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 BCL7BQ9BQE9 202 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 MSRAQ9UJ68 235 aa17.7■□□□□ 0.42
USP48-204ENST00000400301 PSIP1O75475 530 aaKnown RBP17.69■□□□□ 0.42
USP48-204ENST00000400301 GGT2P36268 569 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 ZSWIM7Q19AV6 140 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 MUL1Q969V5 352 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 SLC6A16Q9GZN6 736 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 NMNAT1Q9HAN9 279 aaPredicted RBP17.69■□□□□ 0.42
USP48-204ENST00000400301 IL23AQ9NPF7 189 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 OR1A2Q9Y585 309 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 IRAK3Q9Y616 596 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 RIIAD1A6NNX1 92 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 SLAMF1Q13291 335 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 ZNF776Q68DI1 518 aaPredicted RBP17.69■□□□□ 0.42
USP48-204ENST00000400301 DCDC5Q6ZRR9 648 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 IKBIPQ70UQ0 350 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 TOX2Q96NM4 488 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 SLC28A3Q9HAS3 691 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 ACOT13Q9NPJ3 140 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 SEC14L4Q9UDX3 406 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 VEGFBP49765 207 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 CDH11P55287 796 aa17.69■□□□□ 0.42
USP48-204ENST00000400301 COL9A2Q14055 689 aaPredicted RBP17.69■□□□□ 0.42
USP48-204ENST00000400301 SPHARQ15513 63 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms