RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NACAP1Q9BZK3 213 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 ANKEF1Q9NU02 776 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 PLEKHA6Q9Y2H5 1048 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 NTNG1Q9Y2I2 539 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 ANXA2P2A6NMY6 339 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 LRRTM2O43300 516 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 B4GAT1O43505 415 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 PGLSO95336 258 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 CCDC159P0C7I6 412 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 OR9G9P0C7N8 305 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 P0C879 139 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 TIA1P31483 386 aaKnown RBP eCLIP2.75□□□□□ -1.97
CD44-239ENST00000639002 HMGCLP35914 325 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 RPP38P78345 283 aaKnown RBP2.75□□□□□ -1.97
CD44-239ENST00000639002 CRMP1Q14194 572 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 C16orf54Q6UWD8 224 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 IGFL3Q6UXB1 125 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 CHST3Q7LGC8 479 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 MEX3DQ86XN8 651 aaKnown RBP2.75□□□□□ -1.97
CD44-239ENST00000639002 CACUL1Q86Y37 369 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 SLC22A18ASQ8N1D0 253 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 CLEC1AQ8NC01 280 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 OR13C5Q8NGS8 318 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 FER1L6-AS2Q96M78 137 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 PAXXQ9BUH6 204 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 NT5DC2Q9H857 520 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 RCOR3Q9P2K3 495 aaPredicted RBP2.75□□□□□ -1.97
CD44-239ENST00000639002 MOKQ9UQ07 419 aa2.75□□□□□ -1.97
CD44-239ENST00000639002 A0A087WV48 116 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 NEDD8-MDP1E9PL57 170 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 P4HA2O15460 535 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 SCO2O43819 266 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 FHP07954 510 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ADRA2CP18825 462 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ID1P41134 155 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 PAX2Q02962 417 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 CEACAM7Q14002 265 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 TCP11X2Q5H9J9 407 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ARMCX4Q5H9R4 360 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ERN2Q76MJ5 926 aaKnown RBP2.74□□□□□ -1.97
CD44-239ENST00000639002 DNAJB7Q7Z6W7 309 aaPredicted RBP2.74□□□□□ -1.97
CD44-239ENST00000639002 NLRP14Q86W24 1093 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 UBQLNLQ8IYU4 475 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 TMEM99Q8N816 258 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 VPS33AQ96AX1 596 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ZBED6CLQ96FA7 236 aaPredicted RBP2.74□□□□□ -1.97
CD44-239ENST00000639002 CDHR1Q96JP9 859 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ASB8Q9H765 288 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 CLIC5Q9NZA1 410 aa2.74□□□□□ -1.97
CD44-239ENST00000639002 ANKDD1BA6NHY2 528 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 HOXC4P09017 264 aaPredicted RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 ACKR3P25106 362 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 RAD52P43351 418 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 ALDH3B1P43353 468 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 FHITP49789 147 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 NAGLUP54802 743 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 RIPK4P57078 832 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 CXCL6P80162 114 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 ABRQ12979 859 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 LCP2Q13094 533 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 GSG1Q2KHT4 349 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 LIPJQ5W064 366 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 ZNF776Q68DI1 518 aaPredicted RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 ZNF544Q6NX49 715 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 CREBRFQ8IUR6 639 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 SAMD12Q8N8I0 201 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 IQUBQ8NA54 791 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 ZNF564Q8TBZ8 553 aaPredicted RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 RIT1Q92963 219 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 MAPKAP1Q9BPZ7 522 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 TXLNGYQ9BZA5 131 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 MTIF3Q9H2K0 278 aaKnown RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 UBE2TQ9NPD8 197 aaPredicted RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 CHCHD3Q9NX63 227 aaKnown RBP2.73□□□□□ -1.97
CD44-239ENST00000639002 ADAM22Q9P0K1 906 aa2.73□□□□□ -1.97
CD44-239ENST00000639002 C5orf52A6NGY3 159 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 LYPD3O95274 346 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 GBAP04062 536 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 CCDC175P0C221 793 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 FOSL2P15408 326 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 PDGFRAP16234 1089 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 GDF1P27539 372 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 CALD1Q05682 793 aaKnown RBP2.72□□□□□ -1.97
CD44-239ENST00000639002 CKAP4Q07065 602 aaKnown RBP2.72□□□□□ -1.97
CD44-239ENST00000639002 ISXQ2M1V0 245 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 KRT74Q7RTS7 529 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 ADCK2Q7Z695 626 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 ADGRD2Q7Z7M1 963 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 ELMOD1Q8N336 334 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 Q8NFD4 153 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 ERGIC2Q96RQ1 377 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 CENPOQ9BU64 300 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 MED17Q9NVC6 651 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 RNF24Q9Y225 148 aa2.72□□□□□ -1.97
CD44-239ENST00000639002 RAI1Q7Z5J4 1906 aaPredicted RBP2.72□□□□□ -1.97
CD44-239ENST00000639002 C2orf92A0A1B0GVN3 265 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 CCT8L1PA6NM43 557 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 TNFSF11O14788 317 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 MCF2LO15068 1137 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 PROS1P07225 676 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms