RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ARAFP10398 606 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 POLR2CP19387 275 aaPredicted RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 ZNF10P21506 573 aaPredicted RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 DSTNP60981 165 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CDK6Q00534 326 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 RFX4Q33E94 735 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CYBRD1Q53TN4 286 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 COX20Q5RI15 118 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 OTUD3Q5T2D3 398 aaPredicted RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 OR2T5Q6IEZ7 315 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SPESP1Q6UW49 350 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 SPEM1Q8N4L4 309 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CAMKK1Q8N5S9 505 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CAMKVQ8NCB2 501 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 OR2T29Q8NH02 315 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 OR8K5Q8NH50 307 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 EXOSC8Q96B26 276 aaKnown RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 TM4SF19Q96DZ7 209 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 NRBF2Q96F24 287 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CDX2Q99626 313 aaPredicted RBP13.47□□□□□ -0.25
LIG3-205ENST00000585941 DOHHQ9BU89 302 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 TPSD1Q9BZJ3 242 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 FAM192AQ9GZU8 254 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 CAAP1Q9H8G2 361 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 C2orf42Q9NWW7 574 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 PSME2Q9UL46 239 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 MAP4K5Q9Y4K4 846 aa13.47□□□□□ -0.25
LIG3-205ENST00000585941 A0A0G2JN53 185 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 THRBP10828 461 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 IL9P15248 144 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 FOSL2P15408 326 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 JUNDP17535 347 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 ANXA11P50995 505 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 SELENOWP63302 87 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 MYBPC1Q00872 1141 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 EEF1A2Q05639 463 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 SPIDRQ14159 915 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 C16orf72Q14CZ0 275 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SUZ12Q15022 739 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 ELOCQ15369 112 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SPDYE7PQ495Y7 208 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 CRB2Q5IJ48 1285 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 MANEAQ5SRI9 462 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 BHLHB9Q6PI77 547 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 VN1R4Q7Z5H5 301 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 PATL1Q86TB9 770 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 ZNF655Q8N720 491 aaPredicted RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 OR10G6Q8NH81 332 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 OR5AK3PQ8NH89 298 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SLC37A2Q8TED4 501 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 RLN3Q8WXF3 142 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 RSC1A1Q92681 617 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 MOAP1Q96BY2 351 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 HSH2DQ96JZ2 352 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SLC6A18Q96N87 628 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 BBS4Q96RK4 519 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 MRPS26Q9BYN8 205 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 TCEAL2Q9H3H9 227 aaPredicted RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 A4GALTQ9NPC4 353 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SLAMF7Q9NQ25 335 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 PRDM9Q9NQV7 894 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 SEMA3GQ9NS98 782 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 GIMAP4Q9NUV9 329 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 APOBEC3BQ9UH17 382 aaKnown RBP13.46□□□□□ -0.26
LIG3-205ENST00000585941 UTS2RQ9UKP6 389 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 MYRFQ9Y2G1 1151 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 PADI2Q9Y2J8 665 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 KLHL20Q9Y2M5 609 aa13.46□□□□□ -0.26
LIG3-205ENST00000585941 A0A0J9YY10 115 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 H6PDO95479 791 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 HOXB3P14651 431 aaPredicted RBP13.45□□□□□ -0.26
LIG3-205ENST00000585941 MAGP20916 626 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 CD38P28907 300 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 DCTP40126 519 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 RACK1P63244 317 aaKnown RBP13.45□□□□□ -0.26
LIG3-205ENST00000585941 FBXO42Q6P3S6 717 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 SHQ1Q6PI26 577 aaKnown RBP13.45□□□□□ -0.26
LIG3-205ENST00000585941 TBPL2Q6SJ96 375 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 TMEM64Q6YI46 380 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 TMEM26Q6ZUK4 368 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 OOSP2Q86WS3 158 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 SAMD14Q8IZD0 417 aaPredicted RBP13.45□□□□□ -0.26
LIG3-205ENST00000585941 METTL25Q8N6Q8 603 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 AMER3Q8N944 861 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 SFXN5Q8TD22 340 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ZDHHC1Q8WTX9 485 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 CYGBQ8WWM9 190 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 MAL2Q969L2 176 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 RERGQ96A58 199 aaPredicted RBP13.45□□□□□ -0.26
LIG3-205ENST00000585941 AMDHD1Q96NU7 426 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 OR2A5Q96R48 311 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ZFYVE21Q9BQ24 234 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ABCG4Q9H172 646 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 PHF11Q9UIL8 331 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 PILRAQ9UKJ1 303 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ACSL6Q9UKU0 697 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ENTPD4Q9Y227 616 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 ORC6Q9Y5N6 252 aa13.45□□□□□ -0.26
LIG3-205ENST00000585941 A0A1W2PR48 441 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 TMEM247A6NEH6 219 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms