RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RPS27AP62979 156 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 RPP38P78345 283 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 TNK1Q13470 666 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ABRAXAS2Q15018 415 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 LTB4RQ15722 352 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 C6orf136Q5SQH8 315 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 FAM46CQ5VWP2 391 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 C17orf107Q6ZR85 190 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 FAM47EQ6ZV65 393 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ERN2Q76MJ5 926 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 CCDC186Q7Z3E2 898 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ABI3BPQ7Z7G0 1075 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 DZIP1Q86YF9 867 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 ARL14Q8N4G2 192 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 KIF18AQ8NI77 898 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 TBCKQ8TEA7 893 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 SAP25Q8TEE9 199 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 RAD54LQ92698 747 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 MCCC1Q96RQ3 725 aaPredicted RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 INTS14Q96SY0 518 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 LIME1Q9H400 295 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 S100A14Q9HCY8 104 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 IL17CQ9P0M4 197 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ARMCX1Q9P291 453 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 GIMAP2Q9UG22 337 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 GMEB2Q9UKD1 530 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ZNF346Q9UL40 294 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 FBXO7Q9Y3I1 522 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 PCDHGA1Q9Y5H4 931 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 KLK4Q9Y5K2 254 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 KLF18A0A0U1RQI7 1052 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ANXA2P2A6NMY6 339 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ZNF732B4DXR9 585 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 CCDC188H7C350 402 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 PPIP5K2O43314 1243 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 FCGR3BO75015 233 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ZNF253O75346 499 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 CLN5O75503 358 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 IGHG3P01860 377 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 RPN1P04843 607 aaKnown RBP2.04□□□□□ -2.08
VPS35-207ENST00000568191 FAM58BPP0C7Q3 252 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 PDGFRAP16234 1089 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 PTAFRP25105 342 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 MEOX2P50222 304 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 RIPK4P57078 832 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 CEACAM7Q14002 265 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 KCTD2Q14681 263 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 PCK2Q16822 640 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 PLPP4Q5VZY2 271 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 IGFL3Q6UXB1 125 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 DNAJB7Q7Z6W7 309 aaPredicted RBP2.04□□□□□ -2.08
VPS35-207ENST00000568191 NLRP14Q86W24 1093 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 TIGD4Q8IY51 512 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 TDHQ8IZJ6 230 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ZNF444Q8N0Y2 327 aaPredicted RBP2.04□□□□□ -2.08
VPS35-207ENST00000568191 CCDC89Q8N998 374 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 RNF149Q8NC42 400 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 C8orf46Q8TAG6 207 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 CD99L2Q8TCZ2 262 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 SMPDL3AQ92484 453 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ESAMQ96AP7 390 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 CNDP2Q96KP4 475 aaKnown RBP2.04□□□□□ -2.08
VPS35-207ENST00000568191 FERMT1Q9BQL6 677 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 DEFB126Q9BYW3 111 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 C5orf66Q9H5L9 145 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 LMAN1LQ9HAT1 526 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 AMBNQ9NP70 447 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 ABCC13Q9NSE7 274 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 MED17Q9NVC6 651 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 VNN3Q9NY84 501 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 EXOC6BQ9Y2D4 811 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 SH3GLB1Q9Y371 365 aa2.04□□□□□ -2.08
VPS35-207ENST00000568191 RNF212BA8MTL3 300 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ANHXE9PGG2 379 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 E2F3O00716 465 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 CCSO14618 274 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 MCF2LO15068 1137 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ACSL4O60488 711 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 FRAT2O75474 233 aaPredicted RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 LYPD3O95274 346 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 PRB2P02812 416 aaPredicted RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 GBAP04062 536 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 VIMP08670 466 aaKnown RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 OR9G9P0C7N8 305 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 CALML3P27482 149 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 OR3A1P47881 315 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 KCNJ1P48048 391 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ZNF41P51814 821 aaPredicted RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 BACE1P56817 501 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 IQCCQ4KMZ1 466 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ZNF770Q6IQ21 691 aaPredicted RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 RFWD3Q6PCD5 774 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 SHQ1Q6PI26 577 aaKnown RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 KRT74Q7RTS7 529 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 MEX3DQ86XN8 651 aaKnown RBP2.03□□□□□ -2.08
VPS35-207ENST00000568191 SLC22A18ASQ8N1D0 253 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 OR2L5Q8NG80 312 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 TCP11Q8WWU5 503 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 SLC35C1Q96A29 364 aa2.03□□□□□ -2.08
VPS35-207ENST00000568191 ERP27Q96DN0 273 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms