RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF490Q9ULM2 529 aaPredicted RBP7.88□□□□□ -1.15
USP28-215ENST00000545608 PPT2Q9UMR5 302 aa7.88□□□□□ -1.15
USP28-215ENST00000545608 PPIEQ9UNP9 301 aaKnown RBP7.88□□□□□ -1.15
USP28-215ENST00000545608 SNX24Q9Y343 169 aa7.88□□□□□ -1.15
USP28-215ENST00000545608 NCOA6Q14686 2063 aaPredicted RBP7.88□□□□□ -1.15
USP28-215ENST00000545608 PINLYPA6NC86 204 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ANKDD1BA6NHY2 528 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 EFCAB8A8MWE9 144 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CXorf49A8MYA2 514 aaPredicted RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 CYR61O00622 381 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CLDN4O14493 209 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 TFECO14948 347 aaPredicted RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 PHGDHO43175 533 aaKnown RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 B3GALT2O43825 422 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CDC40O60508 579 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP28-215ENST00000545608 CLEC3AO75596 197 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ZFAND5O76080 213 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 PDE9AO76083 593 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 TPOP07202 933 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CERS1P27544 350 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 PTGS2P35354 604 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 GGT5P36269 586 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 RPL21P46778 160 aaKnown RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 HSPA7P48741 367 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 SMCPP49901 116 aaPredicted RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 LIM2P55344 173 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 HSD17B7P56937 341 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 SLC13A2Q13183 592 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 TERF2Q15554 542 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ADPRMQ3LIE5 342 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 XKR6Q5GH73 641 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ABHD17CQ6PCB6 329 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 FIGNL1Q6PIW4 674 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 FRA10AC1Q70Z53 315 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CLNKQ7Z7G1 428 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CD163Q86VB7 1156 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ZNF595Q8IYB9 648 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CYP4Z2PQ8N1L4 340 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 KRT78Q8N1N4 520 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 MARVELD2Q8N4S9 558 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ZFP62Q8NB50 900 aaPredicted RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 ACBD4Q8NC06 268 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 TTLQ8NG68 377 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 OR2L5Q8NG80 312 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 OR52N2Q8NGI0 321 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 FAM57AQ8TBR7 257 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 VMP1Q96GC9 406 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 RUNDC3BQ96NL0 473 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CSF3RQ99062 836 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 SPOCK3Q9BQ16 436 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 CAPS2Q9BXY5 557 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 DERL2Q9GZP9 239 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 REXO4Q9GZR2 422 aaKnown RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 ENKD1Q9H0I2 346 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 DEFB127Q9H1M4 99 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 POPDC3Q9HBV1 291 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 PRDM7Q9NQW5 492 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 DEPPQ9NTK1 212 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 DNAJC11Q9NVH1 559 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 GPRC5BQ9NZH0 403 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 KCMF1Q9P0J7 381 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 ITGB1BP2Q9UKP3 347 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 DAPP1Q9UN19 280 aa7.87□□□□□ -1.15
USP28-215ENST00000545608 YARS2Q9Y2Z4 477 aaKnown RBP7.87□□□□□ -1.15
USP28-215ENST00000545608 CLGNO14967 610 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CTNSO60931 367 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 OR2J2O76002 312 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 OR6B1O95007 311 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 IFNA16P05015 189 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CCDC166P0CW27 439 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CD1DP15813 335 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 EPORP19235 508 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CD22P20273 847 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 GSTM2P28161 218 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SSTR1P30872 391 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SSTR2P30874 369 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 GMPRP36959 345 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 KCNC1P48547 511 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SSR4P51571 173 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SLC12A2P55011 1212 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 MTTPP55157 894 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 GNG11P61952 73 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 POU4F1Q01851 419 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 GTF3C1Q12789 2109 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 BMPR2Q13873 1038 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 DOC2AQ14183 400 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 OR4D1Q15615 310 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 ZNF750Q32MQ0 723 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 EMC4Q5J8M3 183 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 SULT1C3Q6IMI6 304 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 TRIM40Q6P9F5 258 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 IL20RBQ6UXL0 311 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 CEP128Q6ZU80 1094 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 TRIM46Q7Z4K8 759 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 UBE3DQ7Z6J8 389 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 GPSM1Q86YR5 675 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 ZBED8Q8IZ13 594 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 TCAIMQ8N3R3 496 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 TMEM132CQ8N3T6 1108 aa7.86□□□□□ -1.15
USP28-215ENST00000545608 RPRMLQ8N4K4 120 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms