RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	RNF212	Q495C1	297 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	NEPRO	Q6NW34	567 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	SHQ1	Q6PI26	577 aa	Known RBP	4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	BAIAP2L2	Q6UXY1	529 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	NLRP14	Q86W24	1093 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	VSIG1	Q86XK7	387 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	RNF149	Q8NC42	400 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	KIAA0895	Q8NCT3	520 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	OR6F1	Q8NGZ6	308 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	DEPDC1B	Q8WUY9	529 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	ITLN1	Q8WWA0	313 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	ZNF274	Q96GC6	653 aa	Predicted RBP	4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	IDI2	Q9BXS1	227 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	UBE2T	Q9NPD8	197 aa	Predicted RBP	4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	SH3GLB2	Q9NR46	395 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	GPR173	Q9NS66	373 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	CLEC5A	Q9NY25	188 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	GPR132	Q9UNW8	380 aa		4.57	□□□□□ -1.68
YBX3-210	ENST00000540975	ABCC9	O60706	1549 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	BCLAF3	A2AJT9	711 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	CCDC162P	A2VCL2	907 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	KLLN	B2CW77	178 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975		E9PAM4	449 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	CLN5	O75503	358 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	HCK	P08631	526 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	ACKR3	P25106	362 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	SPR	P35270	261 aa	Predicted RBP	4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	PEX3	P56589	373 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	FASTK	Q14296	549 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	NHLRC3	Q5JS37	347 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	TAF3	Q5VWG9	929 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	KLHL7	Q8IXQ5	586 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	KLHL30-AS1	Q8NEE0	82 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	GPR148	Q8TDV2	347 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	UBLCP1	Q8WVY7	318 aa	Predicted RBP	4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	RUNDC3B	Q96NL0	473 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	HSD17B14	Q9BPX1	270 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	THUMPD3	Q9BV44	507 aa	Known RBP	4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	YY1AP1	Q9H869	796 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	SP140L	Q9H930	580 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	NMUR1	Q9HB89	426 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	MGAT4A	Q9UM21	535 aa		4.56	□□□□□ -1.68
YBX3-210	ENST00000540975	POGZ	Q7Z3K3	1410 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	CALCA	P01258	141 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	VDR	P11473	427 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	MSANTD1	Q6ZTZ1	278 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	FAM47E	Q6ZV65	393 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	CACUL1	Q86Y37	369 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	NHLRC2	Q8NBF2	726 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	ZNRF1	Q8ND25	227 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	ZMAT2	Q96NC0	199 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	MYCBP	Q99417	103 aa	Predicted RBP	4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	S100A14	Q9HCY8	104 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	VPS18	Q9P253	973 aa		4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	MRPL11	Q9Y3B7	192 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-210	ENST00000540975	SYNRG	Q9UMZ2	1314 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	TEX48	A0A1B0GUV7	120 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	GTPBP10	A4D1E9	387 aa	Known RBP	4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	OR5H15	A6NDH6	313 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	FRAT2	O75474	233 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	THY1	P04216	161 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	SKIL	P12757	684 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	SLC1A6	P48664	564 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	CCL14	Q16627	93 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	LYPLAL1	Q5VWZ2	237 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	PODNL1	Q6PEZ8	512 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	TMEM64	Q6YI46	380 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	MR1	Q95460	341 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	RFT1	Q96AA3	541 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	RASL10B	Q96S79	203 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	CITED2	Q99967	270 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	SLC39A8	Q9C0K1	460 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	RSPH9	Q9H1X1	276 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	MED17	Q9NVC6	651 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	ZNF319	Q9P2F9	582 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	ETV7	Q9Y603	341 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	CPQ	Q9Y646	472 aa		4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.54	□□□□□ -1.68
YBX3-210	ENST00000540975	RB1CC1	Q8TDY2	1594 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	BICDL2	A1A5D9	508 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	VGLL3	A8MV65	326 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	B4GAT1	O43505	415 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	LETM1	O95202	739 aa	Predicted RBP	4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ANPEP	P15144	967 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	FHIT	P49789	147 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	AKAP17A	Q02040	695 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-210	ENST00000540975		Q1RN00	199 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ATAD3C	Q5T2N8	411 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	NUFIP2	Q7Z417	695 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ZBED8	Q8IZ13	594 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	CARNMT1	Q8N4J0	409 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ZNF781	Q8N8C0	355 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	KIAA1524	Q8TCG1	905 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	AFAP1L1	Q8TED9	768 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ERGIC2	Q96RQ1	377 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	APOL2	Q9BQE5	337 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ZNF665	Q9H7R5	613 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	VSIG4	Q9Y279	399 aa		4.53	□□□□□ -1.68
YBX3-210	ENST00000540975	ATRX	P46100	2492 aa		4.52	□□□□□ -1.69
YBX3-210	ENST00000540975		A0A1W2PQ72	361 aa		4.52	□□□□□ -1.69

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