RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 RNF130Q86XS8 419 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 PEX5LQ8IYB4 626 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 SLC43A2Q8N370 569 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CCDC197Q8NCU1 140 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 C17orf47Q8NEP4 570 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 OR5M9Q8NGP3 310 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 CHPT1Q8WUD6 406 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KRT35Q92764 455 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 GGHQ92820 318 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 C5orf30Q96GV9 206 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 PANX3Q96QZ0 392 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 NAP1L3Q99457 506 aaPredicted RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 OVOL2Q9BRP0 275 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 KRTAP4-4Q9BYR3 166 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 STRADBQ9C0K7 418 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 NACA2Q9H009 215 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 DDX47Q9H0S4 455 aaKnown RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 TUBB1Q9H4B7 451 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 NMUR1Q9HB89 426 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 MID1IP1Q9NPA3 183 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 MED17Q9NVC6 651 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 FAM120CQ9NX05 1096 aaKnown RBP2.29□□□□□ -2.04
CD44-238ENST00000534296 PLEK2Q9NYT0 353 aa2.29□□□□□ -2.04
CD44-238ENST00000534296 K7EQD1 137 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 PDHXO00330 501 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 EEF2KO00418 725 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 CCSO14618 274 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 OGTO15294 1046 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 CFLARO15519 480 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SYT7O43581 403 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ECE2O60344 883 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ACSL4O60488 711 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SRSF10O75494 262 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 GOSR1O95249 250 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 CCDC192P0DO97 292 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 MBL2P11226 248 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 PCP11498 1178 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 VCLP18206 1134 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ACKR3P25106 362 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SRD5A2P31213 254 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 CASP3P42574 277 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ALDH3B1P43353 468 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 MAGEB1P43366 347 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 NSFP46459 744 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 OR3A1P47881 315 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 RIDAP52758 137 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 SMSP52788 366 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 PEX3P56589 373 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 CDKL1Q00532 357 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SRSF9Q13242 221 aaKnown RBP eCLIP2.28□□□□□ -2.04
CD44-238ENST00000534296 PPP2R5CQ13362 524 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 TSTA3Q13630 321 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 C1orf189Q5VU69 101 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ZNF776Q68DI1 518 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 KCTD11Q693B1 232 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 KRTAP5-4Q6L8H1 288 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SIGLEC15Q6ZMC9 328 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 C3P1Q6ZMU1 363 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ZNF841Q6ZN19 808 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 Q6ZVQ6 151 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ANKRD33Q7Z3H0 272 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SLC47A2Q86VL8 602 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 NLRP14Q86W24 1093 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SLC22A15Q8IZD6 547 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ARL10Q8N8L6 244 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SPPL2AQ8TCT8 520 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 TCP11Q8WWU5 503 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 PTP4A1Q93096 173 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 SNX21Q969T3 373 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 CNRIP1Q96F85 164 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 GUCD1Q96NT3 240 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 RASL10BQ96S79 203 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 DDX50Q9BQ39 737 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 PAPOLGQ9BWT3 736 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 RBM24Q9BX46 236 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 TEX13AQ9BXU3 409 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 ABCG8Q9H221 673 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 C5orf66Q9H5L9 145 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 HEXA-AS1Q9H8Q6 139 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 DBNDD1Q9H9R9 158 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 ELL3Q9HB65 397 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 AKAP7Q9P0M2 348 aaPredicted RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 EIF3KQ9UBQ5 218 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 CTSZQ9UBR2 303 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 MRTO4Q9UKD2 239 aaKnown RBP2.28□□□□□ -2.04
CD44-238ENST00000534296 MGAT4AQ9UM21 535 aa2.28□□□□□ -2.04
CD44-238ENST00000534296 TMEM129A0AVI4 362 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 SERINC4A6NH21 518 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 SLC15A5A6NIM6 579 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 RTCAO00442 366 aaKnown RBP2.27□□□□□ -2.05
CD44-238ENST00000534296 SIGLEC5O15389 551 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 PSMD3O43242 534 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 KIAA0513O60268 411 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 HPP00738 406 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 GSTA1P08263 222 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 HMOX1P09601 288 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 TPBGLP0DKB5 382 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 CD59P13987 128 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 MYOGP15173 224 aa2.27□□□□□ -2.05
CD44-238ENST00000534296 AREGP15514 252 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms