RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 OR51B5Q9H339 312 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 COPS7BQ9H9Q2 264 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 LIN28AQ9H9Z2 209 aaKnown RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF358Q9NW07 568 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 TINAGQ9UJW2 476 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 FBXW2Q9UKT8 454 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 MRPS33Q9Y291 106 aaKnown RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 TSC22D4Q9Y3Q8 395 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 SAP18O00422 153 aaKnown RBP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 FCHO1O14526 889 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 LDB3O75112 727 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 URI1O94763 535 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 PCNAP12004 261 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 EPB42P16452 691 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 GRNP28799 593 aaKnown RBP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 MAGEA12P43365 314 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 ADORA2A-AS1P86434 159 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 HSF1Q00613 529 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 TGM3Q08188 693 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 ACAP2Q15057 778 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 PCBP2Q15366 365 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 PFKFB4Q16877 469 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 WHAMMP3Q1A5X7 153 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 CCDC91Q7Z6B0 441 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 SPPL2CQ8IUH8 684 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 SULF2Q8IWU5 870 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 SRFBP1Q8NEF9 429 aaKnown RBP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 HUS1BQ8NHY5 278 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 UBE2E3Q969T4 207 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 ISL2Q96A47 359 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 CMTM7Q96FZ5 175 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF717Q9BY31 904 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-209ENST00000474432 ROGDIQ9GZN7 287 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 SH3BGRL2Q9UJC5 107 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 LRBAP50851 2863 aa17.27■□□□□ 0.36
COL7A1-209ENST00000474432 CCDC189A1A4V9 331 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ZNF354AO60765 605 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ZFAND5O76080 213 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 SIX3O95343 332 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ALDH18A1P54886 795 aaKnown RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 IGLV3-21P80748 117 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ID2Q02363 134 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 RBPJQ06330 500 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 FAM83EQ2M2I3 478 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 TECRLQ5HYJ1 363 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 SP5Q6BEB4 398 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 LURAP1LQ8IV03 231 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 TMEM132CQ8N3T6 1108 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 SLC44A1Q8WWI5 657 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 CDC42EP4Q9H3Q1 356 aaKnown RBP17.26■□□□□ 0.35
COL7A1-209ENST00000474432 DMRT3Q9NQL9 472 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 DEPPQ9NTK1 212 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ENTPD4Q9Y227 616 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 ABCA12Q86UK0 2595 aa17.26■□□□□ 0.35
COL7A1-209ENST00000474432 SYCE1LA8MT33 242 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 PLPP1O14494 284 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 FGF17O60258 216 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 OR2J2O76002 312 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 ETHE1O95571 254 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 PRF1P14222 555 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 TYK2P29597 1187 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 SERPINB1P30740 379 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 PIK3CBP42338 1070 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 MEOX1P50221 254 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 NR0B1P51843 470 aaKnown RBP17.25■□□□□ 0.35
COL7A1-209ENST00000474432 ART3Q13508 389 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 RCN2Q14257 317 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 CDSNQ15517 529 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 UAP1Q16222 522 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-209ENST00000474432 AP5B1Q2VPB7 878 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 LIPJQ5W064 366 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 OR4C11Q6IEV9 310 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 DGAT2L6Q6ZPD8 337 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 CHSY3Q70JA7 882 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 MRGPRGQ86SM5 289 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 TICAM1Q8IUC6 712 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 SLC34A3Q8N130 599 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 CYP4Z2PQ8N1L4 340 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 FAM98AQ8NCA5 519 aaKnown RBP17.25■□□□□ 0.35
COL7A1-209ENST00000474432 MORN4Q8NDC4 146 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 C16orf52Q8NHV5 167 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 MYOTQ9UBF9 498 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 KLF13Q9Y2Y9 288 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-209ENST00000474432 YARS2Q9Y2Z4 477 aaKnown RBP17.25■□□□□ 0.35
COL7A1-209ENST00000474432 MYO9AB2RTY4 2548 aa17.25■□□□□ 0.35
COL7A1-209ENST00000474432 ZNF407Q9C0G0 2248 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 PINLYPA6NC86 204 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 SYNDIG1LA6NDD5 238 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 H0YIV9 168 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 ADAM10O14672 748 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 PEX1O43933 1283 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 OR6B1O95007 311 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 IFNA16P05015 189 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 GFAPP14136 432 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 ZNF24P17028 368 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 PTGER1P34995 402 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 RFC3P40938 356 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 SSR2P43308 183 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 SERPINB8P50452 374 aa17.24■□□□□ 0.35
COL7A1-209ENST00000474432 HK2P52789 917 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms