RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	VMP1	Q96GC9	406 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	QRFPR	Q96P65	431 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	CDK15	Q96Q40	435 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	CSF3R	Q99062	836 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	MAPKAP1	Q9BPZ7	522 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	ALOXE3	Q9BYJ1	711 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	RNF32	Q9H0A6	362 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	ELOVL6	Q9H5J4	265 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	LYRM4	Q9HD34	91 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	ADAP2	Q9NPF8	381 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	DMRT3	Q9NQL9	472 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	LRFN1	Q9P244	771 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	COPS7A	Q9UBW8	275 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	PHF11	Q9UIL8	331 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	NTNG1	Q9Y2I2	539 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	RNF11	Q9Y3C5	154 aa		10.79	□□□□□ -0.68
CPNE1-222	ENST00000473373	STX16-NPEPL1	H3BU86	382 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	E2F3	O00716	465 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	STX16	O14662	325 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	SUPT7L	O94864	414 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	FAM153B	P0C7A2	387 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	HIST1H1T	P22492	207 aa	Predicted RBP	10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	PPP2R1B	P30154	601 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	PIK3CB	P42338	1070 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	CYB561	P49447	251 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	ID2	Q02363	134 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	TUBA3C	Q13748	450 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	SERTAD2	Q14140	314 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	FAM153C	Q494X1	144 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	DEPDC1	Q5TB30	811 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	C6orf163	Q5TEZ5	329 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	METTL2B	Q6P1Q9	378 aa	Known RBP	10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	TUBA3E	Q6PEY2	450 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	ADGRD1	Q6QNK2	874 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	GFRAL	Q6UXV0	394 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	CNPY4	Q8N129	248 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	SSC4D	Q8WTU2	575 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	NCLN	Q969V3	563 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	DGAT2	Q96PD7	388 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	SORBS1	Q9BX66	1292 aa	Known RBP	10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	OR8D2	Q9GZM6	311 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	PRDM7	Q9NQW5	492 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	MS4A12	Q9NXJ0	267 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	AHSP	Q9NZD4	102 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	ERVK-11	Q9UQG0	969 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	OSGIN2	Q9Y236	505 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	GTF3C1	Q12789	2109 aa		10.78	□□□□□ -0.68
CPNE1-222	ENST00000473373	USP9X	Q93008	2570 aa	Predicted RBP	10.77	□□□□□ -0.68
CPNE1-222	ENST00000473373		H0YIV9	168 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	KLK8	O60259	260 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	OR10H2	O60403	315 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	CTNS	O60931	367 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	OTC	P00480	354 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	EDN3	P14138	238 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	TSPAN8	P19075	237 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	HMOX2	P30519	316 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	MAGEA12	P43365	314 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	SLCO1A2	P46721	670 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	NEK2	P51955	445 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	HNRNPF	P52597	415 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	RBPJ	Q06330	500 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	ELAVL1	Q15717	326 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	SPINK14	Q6IE38	97 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	RPUSD3	Q6P087	351 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	MYO7B	Q6PIF6	2116 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	ZNF793	Q6ZN11	406 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	GPR180	Q86V85	440 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	NUDT13	Q86X67	352 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	ST6GALNAC3	Q8NDV1	305 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	TMEM52	Q8NDY8	209 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	C7orf57	Q8NEG2	295 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	OR52B6	Q8NGF0	335 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	ELP5	Q8TE02	316 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	SELENOM	Q8WWX9	145 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	ISL2	Q96A47	359 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	RBM18	Q96H35	190 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	NSUN5	Q96P11	429 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	GPR78	Q96P69	363 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	SERPINI1	Q99574	410 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	RPF2	Q9H7B2	306 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	LYAR	Q9NX58	379 aa	Known RBP	10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	PCTP	Q9UKL6	214 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	SNX6	Q9UNH7	406 aa		10.77	□□□□□ -0.69
CPNE1-222	ENST00000473373	NBPF19	A0A087WUL8	3843 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	IGKV3D-11	A0A0A0MRZ8	115 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373		A1L4Q6	167 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373		A8MT66	165 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	C17orf105	B2RV13	164 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	PLPP1	O14494	284 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	SEMA7A	O75326	666 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	CRCP	O75575	148 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	SLC25A12	O75746	678 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	ZFAND5	O76080	213 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	CBX6	O95503	412 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	PYGB	P11216	843 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	TPP2	P29144	1249 aa	Predicted RBP	10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	CD96	P40200	585 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	CASP6	P55212	293 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	CDH13	P55290	713 aa		10.76	□□□□□ -0.69
CPNE1-222	ENST00000473373	PER3	P56645	1201 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms