RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SEC24DO94855 1032 aaPredicted RBP16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 OTCP00480 354 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 EPB42P16452 691 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 RPL14P50914 215 aaKnown RBP16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 EFNA3P52797 238 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 SKP1P63208 163 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 RGS1Q08116 209 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 BTBD16Q32M84 506 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 C4orf17Q53FE4 359 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 ABHD17BQ5VST6 288 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 GKAP1Q5VSY0 366 aaPredicted RBP16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 LANCL3Q6ZV70 420 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 GPRIN3Q6ZVF9 776 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 RPS27LQ71UM5 84 aaKnown RBP16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 PDSS2Q86YH6 399 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 TEX9Q8N6V9 391 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 OR4K1Q8NGD4 311 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 TRPC4APQ8TEL6 797 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 HAS2Q92819 552 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 NEIL2Q969S2 332 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 PEX11GQ96HA9 241 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 C5orf34Q96MH7 638 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 SARGQ9BW04 601 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 RBCK1Q9BYM8 510 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 ERRFI1Q9UJM3 462 aaPredicted RBP16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 SLC5A6Q9Y289 635 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 ICE1Q9Y2F5 2266 aa16.95■□□□□ 0.3
SQSTM1-204ENST00000453046 SCN3AQ9NY46 2000 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 A1L4Q6 167 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 OR2W5A6NFC9 320 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 A8MUI8 341 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 CDC123O75794 336 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 ESRRBO95718 433 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 F10P00742 488 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 ALOX15P16050 662 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 IL10P22301 178 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 TNFSF10P50591 281 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 ZNF33BQ06732 778 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 TRAF3Q13114 568 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 PWP1Q13610 501 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 SH2D4BQ5SQS7 431 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 RPUSD3Q6P087 351 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 PIGWQ7Z7B1 504 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 THOC6Q86W42 341 aaKnown RBP16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 BCORP1Q8N888 145 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 ZNF740Q8NDX6 193 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 SUN3Q8TAQ9 357 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 STON2Q8WXE9 905 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 IMMP1LQ96LU5 166 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 RABEP2Q9H5N1 569 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 NPHS2Q9NP85 383 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 MID1IP1Q9NPA3 183 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 STMN3Q9NZ72 180 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 GPRC5BQ9NZH0 403 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 VTI1BQ9UEU0 232 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 MARCOQ9UEW3 520 aaPredicted RBP16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 ZFP69BQ9UJL9 534 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 SLC22A14Q9Y267 594 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 KCNE2Q9Y6J6 123 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 HIVEP3Q5T1R4 2406 aa16.94■□□□□ 0.3
SQSTM1-204ENST00000453046 UBFD1O14562 309 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 WDPCPO95876 746 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ENO1P06733 434 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 FGF4P08620 206 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 RNF224P0DH78 156 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 EDN3P14138 238 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ALOX12P18054 663 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 TSPAN8P19075 237 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 GDF5P43026 501 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 CCNG1P51959 295 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ACTN3Q08043 901 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 RBBP5Q15291 538 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 NSDHLQ15738 373 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 GGTA1PQ4G0N0 100 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 DEFB134Q4QY38 66 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 NIPAL1Q6NVV3 410 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ABHD13Q7L211 337 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ANKRD37Q7Z713 158 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 TMPRSS11BQ86T26 416 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 SHISA5Q8N114 240 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 SNX31Q8N9S9 440 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 OR5T3Q8NGG3 340 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 OR1F2PQ96R84 312 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ELAC2Q9BQ52 826 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 AIF1LQ9BQI0 150 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 NTMT1Q9BV86 223 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 NOL11Q9H8H0 719 aaKnown RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 IPPKQ9H8X2 491 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 PELI2Q9HAT8 420 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 OLAHQ9NV23 265 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 PNPOQ9NVS9 261 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 ZDHHC2Q9UIJ5 367 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 USH1CQ9Y6N9 552 aa16.93■□□□□ 0.3
SQSTM1-204ENST00000453046 URADA6NGE7 173 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 OR7A17O14581 309 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 AZIN1O14977 448 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 HDAC3O15379 428 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 UGDHO60701 494 aa16.92■□□□□ 0.3
SQSTM1-204ENST00000453046 GALR3O60755 368 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms