RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 KCNK12Q9HB15 430 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 KLHL1Q9NR64 748 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 ZCCHC3Q9NUD5 404 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 TAC3Q9UHF0 121 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 SLC9A8Q9Y2E8 581 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 RPL36Q9Y3U8 105 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 WDR90Q96KV7 1748 aa11.36□□□□□ -0.59
MSH6-204ENST00000445503 BRCA1P38398 1863 aaKnown RBP11.36□□□□□ -0.59
MSH6-204ENST00000445503 M0R082 166 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ARHGAP33O14559 1287 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF4O60810 478 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CSTF2P33240 577 aaKnown RBP eCLIP11.35□□□□□ -0.59
MSH6-204ENST00000445503 CASP3P42574 277 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TGM4P49221 684 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 DGKGP49619 791 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 FXNQ16595 210 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 FAM214AQ32MH5 1076 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ATAT1Q5SQI0 421 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF9Q5VWM5 478 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ZNF614Q8N883 585 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 OR8J2Q8NGG1 315 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 OR52N2Q8NGI0 321 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GLYATL1Q969I3 302 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 UBE2E3Q969T4 207 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ZNF566Q969W8 418 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SP140LQ9H930 580 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TMEM184CQ9NVA4 438 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PAQR5Q9NXK6 330 aaPredicted RBP11.35□□□□□ -0.59
MSH6-204ENST00000445503 ASIC5Q9NY37 505 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CLEC2DQ9UHP7 191 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CLCA2Q9UQC9 943 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ENPP4Q9Y6X5 453 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SNTNA6NMZ2 147 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PDPK1O15530 556 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ARHGEF15O94989 841 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PTTG1O95997 202 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PSKH1P11801 424 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PIN1Q13526 163 aaPredicted RBP11.35□□□□□ -0.59
MSH6-204ENST00000445503 NDUFA5Q16718 116 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 FRMPD2BQ6IN97 320 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GRHL2Q6ISB3 625 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 MSANTD1Q6ZTZ1 278 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CCDC71Q8IV32 467 aaPredicted RBP11.35□□□□□ -0.59
MSH6-204ENST00000445503 SLC43A3Q8NBI5 491 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 FIBINQ8TAL6 211 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TP53INP1Q96A56 240 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TMEM80Q96HE8 168 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TMEM246Q9BRR3 403 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TMEM245Q9H330 911 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SPATA7Q9P0W8 599 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 BACE2Q9Y5Z0 518 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TRBV5-3A0A0A0MS03 114 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 AOC2O75106 756 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 C1GALT1C1LP0DN25 315 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CD22P20273 847 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CHMP24386 653 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CD6P30203 668 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PIK3CBP42338 1070 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TAS2R41P59536 307 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ZNF385BQ569K4 471 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ARTNQ5T4W7 220 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GDPD3Q7L5L3 318 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TEX47Q8TBZ9 253 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SLC5A11Q8WWX8 675 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SLC9A6Q92581 669 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ZSCAN5AQ9BUG6 496 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PTGFRNQ9P2B2 879 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SNX7Q9UNH6 387 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PIKFYVEQ9Y2I7 2098 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 PIPSLA2A3N6 862 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GSAPA4D1B5 854 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 OR6C70A6NIJ9 312 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GINS1Q14691 196 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 KIAA1161Q6NSJ0 714 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 RASGEF1AQ8N9B8 481 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 TRMT61BQ9BVS5 477 aaKnown RBP11.35□□□□□ -0.59
MSH6-204ENST00000445503 CDADC1Q9BWV3 514 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 ELAC1Q9H777 363 aaKnown RBP11.35□□□□□ -0.59
MSH6-204ENST00000445503 BTNL2Q9UIR0 455 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 OSGIN1Q9UJX0 560 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 RABL2BQ9UNT1 228 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 GPR52Q9Y2T5 361 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 CLCA3PQ9Y6N3 262 aa11.35□□□□□ -0.59
MSH6-204ENST00000445503 SLC16A5O15375 505 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SSX4O60224 188 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 MMP20O60882 483 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 PDE9AO76083 593 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 DDX5P17844 614 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 GRIN2CQ14957 1233 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF14Q5SWL7 426 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 PRAMEF13Q5VWM6 474 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 PLAG1Q6DJT9 500 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 THOC7Q6I9Y2 204 aaKnown RBP11.34□□□□□ -0.59
MSH6-204ENST00000445503 BRAT1Q6PJG6 821 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 IQCHQ86VS3 1027 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SYNPOQ8N3V7 929 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 ZNF480Q8WV37 535 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TMEM19Q96HH6 336 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 TMEM39AQ9NV64 488 aa11.34□□□□□ -0.59
MSH6-204ENST00000445503 SLC6A14Q9UN76 642 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms