RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 GDPGP1Q6ZNW5 385 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 STXBP4Q6ZWJ1 553 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CYP4V2Q6ZWL3 525 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ASPGQ86U10 573 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 NLRP14Q86W24 1093 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 Q8NBF4 154 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 AQP11Q8NBQ7 271 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 LPCAT1Q8NF37 534 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 OR52B6Q8NGF0 335 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 C8orf46Q8TAG6 207 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 C11orf45Q8TAV5 145 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 MGARPQ8TDB4 240 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 GANCQ8TET4 914 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 LRRC15Q8TF66 581 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 RSPH1Q8WYR4 309 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 GGHQ92820 318 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 CFAP36Q96G28 342 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 C18orf12Q96KH6 178 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 IWS1Q96ST2 819 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 PKP2Q99959 881 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 PINK1Q9BXM7 581 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ACPTQ9BZG2 426 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 PARLQ9H300 379 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ZDHHC6Q9H6R6 413 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 GPN1Q9HCN4 374 aaPredicted RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 S100A14Q9HCY8 104 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 BAIAP2L1Q9UHR4 511 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 MAD2L2Q9UI95 211 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 FBXW2Q9UKT8 454 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ISY1Q9ULR0 285 aaKnown RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ERVK-19Q9WJR5 959 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF510Q9Y2H8 683 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 MRPS18CQ9Y3D5 142 aaKnown RBP2.8□□□□□ -1.96
HMGB1-201ENST00000326004 ETV7Q9Y603 341 aa2.8□□□□□ -1.96
HMGB1-201ENST00000326004 LRP6O75581 1613 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 PLA2R1Q13018 1463 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 FAM135BQ49AJ0 1406 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 IGHV3OR16-10A0A075B7F0 116 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 A0A0A6YYC8 382 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 TMEM129A0AVI4 362 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ASB14A6NK59 587 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 I3L1I5 382 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 NTN3O00634 580 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 CCSO14618 274 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 SYT7O43581 403 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ANGPTL1O95841 491 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 GSTA2P09210 222 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 CPA3P15088 417 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ANPEPP15144 967 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 FCGR2BP31994 310 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 FCGR2CP31995 323 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ATP6V1E1P36543 226 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 SERPINH1P50454 418 aaKnown RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 CRYBA2P53672 197 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 EVCP57679 992 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 BTG1P62324 171 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 LCP2Q13094 533 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 RPS6KA1Q15418 735 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 PKN2Q16513 984 aaKnown RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 C3AR1Q16581 482 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 AARDQ4LEZ3 155 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 RFTN2Q52LD8 501 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 PRAMEF8Q5VWM4 474 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 LYPLAL1Q5VWZ2 237 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 DOK6Q6PKX4 331 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 PRSS42Q7Z5A4 293 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 TMEM126BQ8IUX1 230 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 LAX1Q8IWV1 398 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 THEM5Q8N1Q8 247 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ATP8B4Q8TF62 1192 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 SMPDL3AQ92484 453 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 BCL2L2Q92843 193 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 EPSTI1Q96J88 318 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 SLC45A3Q96JT2 553 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 CCDC43Q96MW1 224 aaKnown RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 GUCD1Q96NT3 240 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 CABLES2Q9BTV7 478 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 LRRC61Q9BV99 259 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 TSPYL1Q9H0U9 437 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 PANK3Q9H999 370 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 MAGEF1Q9HAY2 307 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 ZNF319Q9P2F9 582 aa2.79□□□□□ -1.96
HMGB1-201ENST00000326004 SUPT6HQ7KZ85 1726 aaKnown RBP2.79□□□□□ -1.96
HMGB1-201ENST00000326004 FRMPD1Q5SYB0 1578 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 EFCAB5A4FU69 1503 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 DENND4BO75064 1496 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 BLMP54132 1417 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 TNS2Q63HR2 1409 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 IGHV3-38A0A0C4DH36 116 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 ATP6AP2A0A1C7CYW4 349 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 A0A1W2PRV1 198 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 GLTPD2A6NH11 291 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 KRTAP16-1A8MUX0 517 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 EPM2AB3EWF7 344 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 E9PQ18 207 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 CHUKO15111 745 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 HTATSF1O43719 755 aaKnown RBP2.78□□□□□ -1.96
HMGB1-201ENST00000326004 GAS8O95995 478 aa2.78□□□□□ -1.96
HMGB1-201ENST00000326004 SBK2P0C263 348 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms