RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMEM19Q96HH6 336 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 C12orf66Q96MD2 445 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 EFCAB11Q9BUY7 163 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 HMG20AQ9NP66 347 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 PRKAG2Q9UGJ0 569 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 IL20RAQ9UHF4 553 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 ERGIC3Q9Y282 383 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 A0A1W2PP55 124 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 LRRTM2O43300 516 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 SLC28A2O43868 658 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 GPR37L1O60883 481 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 ADRA2AP08913 450 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 CDH3P22223 829 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 DSTNP60981 165 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 KCNC3Q14003 757 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 PROX2Q3B8N5 592 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 CHCHD4Q8N4Q1 142 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 SLC38A5Q8WUX1 472 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 RAD51AP1Q96B01 352 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 BRF2Q9HAW0 419 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 BTNL2Q9UIR0 455 aa15.85■□□□□ 0.13
VPS54-201ENST00000272322 HEATR5BQ9P2D3 2071 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 KRBA1A5PL33 1030 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 RNASET2O00584 256 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 ADAMDEC1O15204 470 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 RGS5O15539 181 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 PRMT3O60678 531 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 TNFRSF21O75509 655 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ADH1CP00326 375 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 P2RY2P41231 377 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 SERPINB10P48595 397 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 HNRNPA1L2Q32P51 320 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 ARMCX4Q5H9R4 360 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 TRUB1Q8WWH5 349 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 REPS1Q96D71 796 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 COQ10AQ96MF6 247 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 RSPO3Q9BXY4 272 aaPredicted RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 CAPN10Q9HC96 672 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 NARSO43776 548 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 TMPRSS11DO60235 418 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 UGDHO60701 494 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ATP6V1G1O75348 118 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 LIM2P55344 173 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 DCDC1P59894 354 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 MLLT1Q03111 559 aaPredicted RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 KEAP1Q14145 624 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 PUM1Q14671 1186 aaKnown RBP eCLIP15.84■□□□□ 0.13
VPS54-201ENST00000272322 EGFL6Q8IUX8 553 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 B3GNT7Q8NFL0 401 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 OR52E4Q8NGH9 312 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 OR52N2Q8NGI0 321 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 OTULINQ96BN8 352 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ZNF347Q96SE7 839 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ZCCHC2Q9C0B9 1178 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 SEC16AO15027 2179 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 PCGF2P35227 344 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 DEPDC1Q5TB30 811 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 NEK10Q6ZWH5 1172 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 SLC22A16Q86VW1 577 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 LACC1Q8IV20 430 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 WDR36Q8NI36 951 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 ZNF675Q8TD23 568 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 SMAD5Q99717 465 aaKnown RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 NMNAT1Q9HAN9 279 aaPredicted RBP15.84■□□□□ 0.13
VPS54-201ENST00000272322 TMEM165Q9HC07 324 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ACER3Q9NUN7 267 aa15.84■□□□□ 0.13
VPS54-201ENST00000272322 ANHXE9PGG2 379 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 M0R082 166 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 LILRB5O75023 590 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 GABARAPO95166 117 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 ALOX12P18054 663 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 TEAD4Q15561 434 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 FAM71E1Q6IPT2 247 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 FAM129CQ86XR2 697 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 GPR65Q8IYL9 337 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 CCDC116Q8IYX3 515 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 FGF13Q92913 245 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 HHIPQ96QV1 700 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 KLHL31Q9H511 634 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 ZNF226Q9NYT6 803 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 CLEC2DQ9UHP7 191 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 CA5BQ9Y2D0 317 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 GPSM3Q9Y4H4 160 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 QSOX1O00391 747 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 PI15O43692 258 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 IFNW1P05000 195 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 BUD31P41223 144 aaPredicted RBP15.83■□□□□ 0.12
VPS54-201ENST00000272322 SOX3P41225 446 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 SSR2P43308 183 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 EIF2B2P49770 351 aaKnown RBP15.83■□□□□ 0.12
VPS54-201ENST00000272322 BCAP31P51572 246 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 RELAQ04206 551 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 DOC2BQ14184 412 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 MICAQ29983 383 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 FAHD1Q6P587 224 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 PAQR6Q6TCH4 344 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 ERN2Q76MJ5 926 aaKnown RBP15.83■□□□□ 0.12
VPS54-201ENST00000272322 C6orf120Q7Z4R8 191 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 SLC9B2Q86UD5 537 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 SVOPQ8N4V2 548 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms