RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SPC24Q8NBT2 197 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 CHDHQ8NE62 594 aaPredicted RBP9.24□□□□□ -0.93
LIG1-209ENST00000596104 MYRIPQ8NFW9 859 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 OR10Q1Q8NGQ4 319 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 MS4A6EQ96DS6 147 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 PDLIM5Q96HC4 596 aaKnown RBP9.24□□□□□ -0.93
LIG1-209ENST00000596104 QRFPRQ96P65 431 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 FAM173AQ9BQD7 235 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 LZTFL1Q9NQ48 299 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 Q9UFV3 132 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 ST6GALNAC2Q9UJ37 374 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 KCNE2Q9Y6J6 123 aa9.24□□□□□ -0.93
LIG1-209ENST00000596104 ABCA4P78363 2273 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 HCFC1P51610 2035 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 LRIT2A6NDA9 550 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 WWP2O00308 870 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CYR61O00622 381 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CLDN4O14493 209 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ERI3O43414 337 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 NRDCO43847 1150 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 SUSD5O60279 629 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 WDR1O75083 606 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 BANF1O75531 89 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 TTC4O95801 387 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CELA3AP09093 270 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ENDOUP21128 410 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 SAT1P21673 171 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CCZ1BP86790 482 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CCZ1P86791 482 aaPredicted RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 FOXD4Q12950 439 aaPredicted RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 SLC13A2Q13183 592 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CEBPEQ15744 281 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ZNF750Q32MQ0 723 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 SLC25A35Q3KQZ1 300 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ADPRMQ3LIE5 342 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 MSS51Q4VC12 460 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 SPANXN3Q5MJ09 141 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 RNASEH2BQ5TBB1 312 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 CCDC137Q6PK04 289 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 ARSKQ6UWY0 536 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 HSDL2Q6YN16 418 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 SLCO4C1Q6ZQN7 724 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 RTL4Q6ZR62 310 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CLNKQ7Z7G1 428 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 GAS2L3Q86XJ1 694 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 PPIL6Q8IXY8 311 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ZNF595Q8IYB9 648 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 KLHDC8AQ8IYD2 350 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ZZZ3Q8IYH5 903 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 TMEM132CQ8N3T6 1108 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 RASGEF1CQ8N431 466 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ZNF321PQ8N8H1 164 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 GPATCH11Q8N954 259 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 FAM47BQ8NA70 645 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 GOLM1Q8NBJ4 401 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 TRIM58Q8NG06 486 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 PTPMT1Q8WUK0 201 aaPredicted RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 SREK1Q8WXA9 508 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 SCYL1Q96KG9 808 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CSF3RQ99062 836 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 GPATCH1Q9BRR8 931 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 POLDIP3Q9BY77 421 aaKnown RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 IL1RL2Q9HB29 575 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 RASSF1Q9NS23 344 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 CORO1CQ9ULV4 474 aaPredicted RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 RPH3AQ9Y2J0 694 aaPredicted RBP9.23□□□□□ -0.93
LIG1-209ENST00000596104 VWA7Q9Y334 891 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 AKAP6Q13023 2319 aa9.23□□□□□ -0.93
LIG1-209ENST00000596104 ZNF407Q9C0G0 2248 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 SYNDIG1LA6NDD5 238 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 CDC7O00311 574 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 PROM1O43490 865 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 B3GALT2O43825 422 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 CTNSO60931 367 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 FAM155BO75949 473 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 C1GALT1C1LP0DN25 315 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 CCL3P10147 92 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 ZNF37AP17032 561 aaPredicted RBP9.22□□□□□ -0.93
LIG1-209ENST00000596104 GSTM2P28161 218 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 DNASE1L1P49184 302 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 LIM2P55344 173 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 PPP2R2AP63151 447 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 CDKL1Q00532 357 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 BMPR2Q13873 1038 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 SNTB1Q13884 538 aaKnown RBP9.22□□□□□ -0.93
LIG1-209ENST00000596104 SLBPQ14493 270 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIG1-209ENST00000596104 C1orf185Q5T7R7 199 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 TEDDM1Q5T9Z0 273 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 RIPPLY2Q5TAB7 128 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 FAM45BPQ6NSW5 357 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 TMIGD1Q6UXZ0 262 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 VN1R5Q7Z5H4 357 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 IGDCC3Q8IVU1 814 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 MORN4Q8NDC4 146 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 TTLQ8NG68 377 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 OR8K3Q8NH51 312 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 GABPB2Q8TAK5 448 aaPredicted RBP9.22□□□□□ -0.93
LIG1-209ENST00000596104 FAM45AQ8TCE6 357 aa9.22□□□□□ -0.93
LIG1-209ENST00000596104 DAZLQ92904 295 aaKnown RBP9.22□□□□□ -0.93
LIG1-209ENST00000596104 SLCO2A1Q92959 643 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms